Variant report

Variant	rs7951897
Chromosome Location	chr11:101307853-101307854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101214119..101216758-chr11:101307502..101310492,2	MCF-7	breast:
2	chr11:101169676..101170935-chr11:101306930..101307859,6	MCF-7	breast:
3	chr11:100870263..100871131-chr11:101307054..101307953,2	MCF-7	breast:
4	chr11:101299826..101304335-chr11:101307356..101314246,9	MCF-7	breast:
5	chr11:101305136..101310354-chr11:101310861..101314380,7	MCF-7	breast:
6	chr11:101170357..101171873-chr11:101307513..101310184,2	MCF-7	breast:
7	chr11:101206639..101207593-chr11:101306941..101307918,9	MCF-7	breast:
8	chr11:100992008..101001878-chr11:101300412..101311512,29	MCF-7	breast:
9	chr11:101209771..101213606-chr11:101305412..101309075,4	MCF-7	breast:
10	chr11:101206446..101207671-chr11:101306899..101307918,17	MCF-7	breast:
11	chr11:101169676..101170680-chr11:101306930..101307859,6	MCF-7	breast:
12	chr11:101206514..101207511-chr11:101306955..101307872,5	MCF-7	breast:
13	chr11:101207771..101208275-chr11:101307206..101308039,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10082588	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11224762	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11224763	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11224764	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11224765	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11224766	0.89[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12273188	0.87[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs12276736	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12798689	0.90[YRI][hapmap]
rs12804368	0.92[ASN][1000 genomes]
rs4255512	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4271356	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6590859	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7108099	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs7948940	0.89[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7952146	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv468851	chr11:101268447-101330807	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv556132	chr11:101268447-101330807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101302000-101316800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:101304400-101312400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:101305000-101312200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:101307000-101311800	Weak transcription	Ovary	ovary
5	chr11:101307000-101312000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:101307600-101311600	Weak transcription	Aorta	Aorta
7	chr11:101307600-101312400	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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