Variant report

Variant	rs12804391
Chromosome Location	chr11:101323983-101323984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10444351	0.98[ASN][1000 genomes]
rs10791472	0.93[ASN][1000 genomes]
rs10791473	0.98[ASN][1000 genomes]
rs10791474	0.98[ASN][1000 genomes]
rs10791475	0.98[ASN][1000 genomes]
rs10895109	0.93[ASN][1000 genomes]
rs10895110	0.98[ASN][1000 genomes]
rs10895112	0.95[ASN][1000 genomes]
rs10895113	0.98[ASN][1000 genomes]
rs10895114	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs11224765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11224766	1.00[CHB][hapmap]
rs11224768	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs11224769	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs11224770	0.98[ASN][1000 genomes]
rs11224771	0.98[ASN][1000 genomes]
rs11224772	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11224773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11819801	0.93[ASN][1000 genomes]
rs12273188	1.00[CHB][hapmap]
rs12786558	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12788461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12791865	0.87[AMR][1000 genomes]
rs12795728	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797690	0.98[ASN][1000 genomes]
rs12804368	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12804595	0.95[ASN][1000 genomes]
rs12805398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824933	0.91[ASN][1000 genomes]
rs4396256	0.98[ASN][1000 genomes]
rs4405276	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs4489713	0.98[ASN][1000 genomes]
rs4522135	0.95[ASN][1000 genomes]
rs6590859	0.91[ASN][1000 genomes]
rs6590860	0.98[ASN][1000 genomes]
rs6590861	0.98[ASN][1000 genomes]
rs6590862	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs7105083	0.98[ASN][1000 genomes]
rs7109734	0.95[ASN][1000 genomes]
rs7110162	0.95[ASN][1000 genomes]
rs7113655	0.91[ASN][1000 genomes]
rs7120857	0.98[ASN][1000 genomes]
rs7121124	0.98[ASN][1000 genomes]
rs7928028	0.98[ASN][1000 genomes]
rs7928922	0.91[ASN][1000 genomes]
rs7930422	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs7931399	0.93[ASN][1000 genomes]
rs7935581	0.93[ASN][1000 genomes]
rs7936768	0.98[ASN][1000 genomes]
rs7942665	0.98[ASN][1000 genomes]
rs7947695	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs7950048	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv468851	chr11:101268447-101330807	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv556132	chr11:101268447-101330807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2830219	chr11:101319531-101382967	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101314400-101352800	Weak transcription	Aorta	Aorta
2	chr11:101316400-101330000	Weak transcription	Fetal Lung	lung
3	chr11:101317400-101324400	Weak transcription	NH-A	brain
4	chr11:101317600-101324000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:101318800-101324200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr11:101318800-101327800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:101319600-101324200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr11:101320000-101336600	Weak transcription	Ovary	ovary
9	chr11:101321200-101328600	Weak transcription	NHDF-Ad	bronchial
10	chr11:101322000-101324800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links