Variant report

Variant	rs12786558
Chromosome Location	chr11:101345105-101345106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11224765	0.83[CEU][hapmap];1.00[AMR][1000 genomes]
rs11224772	0.83[CEU][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11224773	0.92[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11224779	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs11224780	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs11224781	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11224783	0.86[JPT][hapmap]
rs11224805	0.83[CEU][hapmap];1.00[AFR][1000 genomes]
rs11224811	0.82[CEU][hapmap]
rs11224815	0.83[CEU][hapmap]
rs11822192	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12362157	0.86[JPT][hapmap]
rs12362848	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs12366144	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12788461	0.92[CEU][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12791865	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12793746	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12795728	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12801419	0.81[EUR][1000 genomes]
rs12804368	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12804391	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12805398	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12806241	0.84[CEU][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs36111323	1.00[AFR][1000 genomes]
rs7117447	0.86[JPT][hapmap]
rs72982229	1.00[AFR][1000 genomes]
rs72984228	1.00[AFR][1000 genomes]
rs7948300	0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs7948687	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2830219	chr11:101319531-101382967	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101314400-101352800	Weak transcription	Aorta	Aorta
2	chr11:101330200-101361400	Weak transcription	Fetal Lung	lung
3	chr11:101337800-101368200	Weak transcription	Ovary	ovary
4	chr11:101339800-101349400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:101342200-101345400	Weak transcription	NHDF-Ad	bronchial
6	chr11:101342200-101357200	Weak transcription	NHLF	lung
7	chr11:101342800-101349200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:101344800-101346400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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