Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11224784	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11224785	1.00[JPT][hapmap]
rs11224805	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11224815	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11821584	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11826165	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12270234	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12361641	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12786558	0.82[CEU][hapmap]
rs12786942	0.91[CEU][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12787386	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12789670	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12791865	0.82[CEU][hapmap]
rs12792834	0.91[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12793746	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs12800794	0.85[AMR][1000 genomes]
rs12801419	1.00[JPT][hapmap]
rs12806241	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs36111323	0.81[AMR][1000 genomes]
rs6590866	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7924434	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7924551	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7927664	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7931830	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7932073	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7934021	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7938416	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7952474	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101375200-101387400	Weak transcription	Ovary	ovary
2	chr11:101376200-101391600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:101382000-101386800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:101382200-101387000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:101384800-101388000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr11:101384800-101388000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr11:101384800-101388400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:101385000-101387600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:101385000-101387800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:101385000-101388000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr11:101385000-101388000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr11:101385200-101385800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:101385200-101386000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr11:101385400-101385800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr11:101385600-101386000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:101385600-101387800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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