Variant report

Variant	rs12786942
Chromosome Location	chr11:101394765-101394766
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11224785	0.82[JPT][hapmap]
rs11224805	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11224811	0.91[CEU][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11224815	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11821584	0.82[JPT][hapmap]
rs12270234	0.82[JPT][hapmap]
rs12787386	0.82[JPT][hapmap]
rs12789670	0.82[JPT][hapmap]
rs12792834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12793746	1.00[CEU][hapmap];0.84[AMR][1000 genomes]
rs12800794	0.85[AMR][1000 genomes]
rs12806241	0.93[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes]
rs36111323	0.81[AMR][1000 genomes]
rs6590866	0.82[JPT][hapmap]
rs7924434	0.82[JPT][hapmap]
rs7927664	0.82[JPT][hapmap]
rs7932073	0.82[JPT][hapmap]
rs7938416	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101387600-101400800	Weak transcription	Ovary	ovary
2	chr11:101392400-101402600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:101393600-101395400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr11:101393600-101395800	Weak transcription	Fetal Intestine Large	intestine
5	chr11:101393600-101396600	Weak transcription	Fetal Intestine Small	intestine
6	chr11:101394000-101395000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:101394200-101395000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr11:101394200-101395800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr11:101394400-101394800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:101394400-101395000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr11:101394600-101394800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:101394600-101395000	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr11:101394600-101398400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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