Variant report

Variant	rs11224815
Chromosome Location	chr11:101390471-101390472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11224765	0.91[MKK][hapmap]
rs11224772	1.00[MKK][hapmap]
rs11224773	0.91[MKK][hapmap]
rs11224805	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11224811	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11821584	1.00[CHB][hapmap]
rs12786558	0.83[CEU][hapmap]
rs12786942	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12788461	0.91[MKK][hapmap]
rs12791865	0.84[CEU][hapmap]
rs12792834	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12793746	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes]
rs12800794	0.85[AMR][1000 genomes]
rs12806241	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs36111323	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101376200-101391600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:101387600-101400800	Weak transcription	Ovary	ovary
3	chr11:101387800-101391200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:101387800-101391600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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