Variant report

Variant	rs34547936
Chromosome Location	chr13:39617706-39617707
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39613981..39615721-chr13:39616266..39619122,2	K562	blood:
2	chr13:39610419..39613692-chr13:39616080..39618520,4	K562	blood:

Variant related genes	Relation type
ENSG00000188811	Chromatin interaction
ENSG00000120685	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17058707	1.00[AMR][1000 genomes]
rs17058710	1.00[AMR][1000 genomes]
rs17058720	1.00[AMR][1000 genomes]
rs7321321	1.00[AMR][1000 genomes]
rs73466063	1.00[AFR][1000 genomes]
rs73466068	1.00[AFR][1000 genomes]
rs73466102	1.00[AFR][1000 genomes]
rs73467927	1.00[AFR][1000 genomes]
rs9594321	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2753642	chr13:39522300-39649000	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2753553	chr13:39526600-39649000	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39613000-39629000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:39613000-39636200	Weak transcription	Spleen	Spleen
3	chr13:39613200-39622200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr13:39613200-39626600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:39613200-39636400	Weak transcription	Gastric	stomach
6	chr13:39613200-39637200	Weak transcription	Pancreas	Pancrea
7	chr13:39613200-39647000	Weak transcription	Left Ventricle	heart
8	chr13:39613200-39647200	Weak transcription	Lung	lung
9	chr13:39613400-39620600	Weak transcription	Psoas Muscle	Psoas
10	chr13:39613400-39622400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr13:39613400-39625000	Weak transcription	HSMMtube	muscle
12	chr13:39613400-39646600	Weak transcription	Aorta	Aorta
13	chr13:39613600-39618000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr13:39613600-39618000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr13:39613600-39618200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr13:39613600-39623400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr13:39613600-39625200	Weak transcription	NHLF	lung
18	chr13:39613600-39626600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr13:39613600-39626600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr13:39613600-39629000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr13:39613600-39629200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr13:39613600-39629800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr13:39613800-39618000	Weak transcription	NHEK	skin
24	chr13:39613800-39618200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr13:39613800-39618200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr13:39613800-39618200	Weak transcription	Brain Anterior Caudate	brain
27	chr13:39613800-39619200	Weak transcription	NH-A	brain
28	chr13:39613800-39620400	Weak transcription	Stomach Mucosa	stomach
29	chr13:39613800-39621000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr13:39613800-39621400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr13:39613800-39622400	Weak transcription	HSMM	muscle
32	chr13:39613800-39623200	Weak transcription	HMEC	breast
33	chr13:39613800-39627000	Weak transcription	Brain Substantia Nigra	brain
34	chr13:39613800-39639200	Weak transcription	Fetal Stomach	stomach
35	chr13:39614000-39625400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr13:39614000-39627000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr13:39614000-39627000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr13:39614000-39628400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr13:39614000-39634400	Weak transcription	Fetal Kidney	kidney
40	chr13:39614200-39618200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr13:39614400-39620200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr13:39614400-39644000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr13:39614600-39619800	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr13:39614600-39623800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr13:39614800-39618000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr13:39615000-39618000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr13:39615000-39618200	Weak transcription	Brain Hippocampus Middle	brain
48	chr13:39615000-39618200	Weak transcription	Fetal Brain Female	brain
49	chr13:39615000-39618200	Weak transcription	Fetal Intestine Large	intestine
50	chr13:39615000-39618200	Weak transcription	Placenta	Placenta

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