Variant report

Variant	rs73467927
Chromosome Location	chr13:39479463-39479464
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs34547936	1.00[AFR][1000 genomes]
rs61744595	1.00[AMR][1000 genomes]
rs7337737	1.00[AMR][1000 genomes]
rs73466024	1.00[AMR][1000 genomes]
rs73466063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73466068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73466102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467939	1.00[AMR][1000 genomes]
rs7989622	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39477200-39480000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr13:39478800-39480600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:39478800-39480600	Enhancers	NHEK	skin
4	chr13:39479000-39480400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr13:39479000-39480600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr13:39479000-39480600	Enhancers	HMEC	breast
7	chr13:39479400-39480400	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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