Variant report

Variant	rs7337737
Chromosome Location	chr13:39488753-39488754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs61744595	1.00[AMR][1000 genomes]
rs73466024	1.00[AMR][1000 genomes]
rs73466063	1.00[AMR][1000 genomes]
rs73466068	1.00[AMR][1000 genomes]
rs73466102	1.00[AMR][1000 genomes]
rs73467927	1.00[AMR][1000 genomes]
rs73467939	1.00[AMR][1000 genomes]
rs7983433	0.82[YRI][hapmap]
rs7989622	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7337737	RNF212	trans	lymphoblastoid	seeQTL
rs7337737	NLGN4X	trans	lymphoblastoid	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39485200-39489800	Weak transcription	HMEC	breast
2	chr13:39488200-39488800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr13:39488400-39488800	Active TSS	Hela-S3	cervix
4	chr13:39488400-39488800	Enhancers	HepG2	liver
5	chr13:39488400-39489000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:39488400-39490000	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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