Variant report

Variant	rs34556914
Chromosome Location	chr17:37695174-37695175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:37691124..37694246-chr17:37695012..37698279,3	K562	blood:
2	chr17:37618016..37620005-chr17:37693592..37695234,2	MCF-7	breast:
3	chr17:37694579..37696868-chr17:37963593..37966508,2	MCF-7	breast:
4	chr17:37694512..37696186-chr17:37706631..37708781,2	K562	blood:
5	chr17:37690909..37693852-chr17:37693877..37696512,2	K562	blood:
6	chr17:37685073..37688740-chr17:37694836..37697830,4	K562	blood:
7	chr17:37694321..37697283-chr17:37703102..37705824,2	K562	blood:

Variant related genes	Relation type
ENSG00000167258	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12938115	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12942965	1.00[AMR][1000 genomes]
rs12946647	1.00[AMR][1000 genomes]
rs12947984	1.00[AMR][1000 genomes]
rs34496115	1.00[AMR][1000 genomes]
rs34707882	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35662374	1.00[AMR][1000 genomes]
rs58513867	1.00[AMR][1000 genomes]
rs59785347	1.00[AMR][1000 genomes]
rs71369759	1.00[AMR][1000 genomes]
rs71369762	1.00[AMR][1000 genomes]
rs8071275	1.00[AMR][1000 genomes]
rs8080057	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
2	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
3	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
4	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
5	nsv1061951	chr17:37442228-37770903	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
6	nsv543341	chr17:37442228-37770903	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
8	nsv532712	chr17:37521822-37768345	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
9	nsv1063848	chr17:37575622-37707592	Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
10	nsv833442	chr17:37692880-37861291	Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
11	nsv521294	chr17:37694709-37804858	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37660600-37704400	Weak transcription	Stomach Mucosa	stomach
2	chr17:37675400-37704000	Weak transcription	Right Atrium	heart
3	chr17:37683000-37695200	Weak transcription	Fetal Heart	heart
4	chr17:37683800-37695200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr17:37683800-37703000	Weak transcription	Fetal Brain Male	brain
6	chr17:37683800-37719400	Weak transcription	Psoas Muscle	Psoas
7	chr17:37685600-37702600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr17:37686000-37696400	Weak transcription	Primary B cells from cord blood	blood
9	chr17:37687400-37702800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr17:37687400-37704000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr17:37687400-37706600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr17:37687600-37695800	Weak transcription	Lung	lung
13	chr17:37687800-37699600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr17:37687800-37699600	Weak transcription	Pancreas	Pancrea
15	chr17:37687800-37699800	Weak transcription	Ovary	ovary
16	chr17:37687800-37701000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr17:37687800-37701200	Weak transcription	Aorta	Aorta
18	chr17:37687800-37701200	Weak transcription	Left Ventricle	heart
19	chr17:37687800-37701400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr17:37687800-37701400	Weak transcription	Colon Smooth Muscle	Colon
21	chr17:37687800-37702800	Weak transcription	Right Ventricle	heart
22	chr17:37687800-37702800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr17:37687800-37702800	Weak transcription	Spleen	Spleen
24	chr17:37687800-37703600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr17:37687800-37705000	Weak transcription	NHLF	lung
26	chr17:37687800-37709600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr17:37687800-37729800	Weak transcription	Small Intestine	intestine
28	chr17:37688000-37699600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr17:37688000-37701000	Weak transcription	Brain Anterior Caudate	brain
30	chr17:37688000-37701000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr17:37688000-37702800	Weak transcription	Brain Germinal Matrix	brain
32	chr17:37688000-37707400	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr17:37688400-37695600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr17:37688400-37699400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr17:37688400-37700400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr17:37688400-37700800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr17:37688400-37701200	Weak transcription	Brain Angular Gyrus	brain
38	chr17:37688400-37701200	Weak transcription	Brain Hippocampus Middle	brain
39	chr17:37688400-37701400	Weak transcription	Brain Substantia Nigra	brain
40	chr17:37688400-37701400	Weak transcription	Thymus	Thymus
41	chr17:37688400-37702800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr17:37688400-37703800	Weak transcription	Esophagus	oesophagus
43	chr17:37688400-37703800	Weak transcription	Fetal Kidney	kidney
44	chr17:37688400-37703800	Weak transcription	NHEK	skin
45	chr17:37688400-37704600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr17:37688400-37705000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr17:37688400-37705600	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr17:37688400-37708000	Weak transcription	Gastric	stomach
49	chr17:37688400-37709600	Weak transcription	Colonic Mucosa	Colon
50	chr17:37688400-37711600	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links