Variant report

Variant	rs34559149
Chromosome Location	chr1:85872541-85872542
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv830470	chr1:85820775-86014080	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1008877	chr1:85843238-85897570	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3393958	chr1:85857980-85874598	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	esv3358969	chr1:85872483-85872937	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85856000-85872800	Weak transcription	Fetal Intestine Small	intestine
2	chr1:85862200-85874600	Weak transcription	Pancreas	Pancrea
3	chr1:85864000-85872600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:85864400-85873000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:85864400-85874600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:85864800-85876800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:85865400-85872800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:85868600-85872800	Enhancers	Liver	Liver
9	chr1:85869000-85872800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:85869200-85873200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr1:85869800-85874400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:85870000-85873000	Enhancers	HSMMtube	muscle
13	chr1:85870200-85872600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:85870200-85874800	Enhancers	Osteobl	bone
15	chr1:85870400-85872800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr1:85870400-85872800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr1:85870600-85872800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr1:85870600-85872800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr1:85870800-85872600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:85870800-85872600	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr1:85870800-85872800	Enhancers	NHDF-Ad	bronchial
22	chr1:85871000-85872800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:85871400-85872800	Weak transcription	Brain Substantia Nigra	brain
24	chr1:85871400-85873000	Weak transcription	Brain Anterior Caudate	brain
25	chr1:85871400-85874000	Enhancers	HSMM	muscle
26	chr1:85871400-85878400	Weak transcription	Fetal Muscle Leg	muscle
27	chr1:85871600-85872600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr1:85871600-85872800	Weak transcription	Aorta	Aorta
29	chr1:85871600-85873200	Weak transcription	Stomach Mucosa	stomach
30	chr1:85871600-85876600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr1:85871800-85872600	Weak transcription	A549	lung
32	chr1:85871800-85872800	Enhancers	Muscle Satellite Cultured Cells	--
33	chr1:85871800-85872800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr1:85871800-85872800	Weak transcription	Colon Smooth Muscle	Colon
35	chr1:85871800-85872800	Enhancers	NH-A	brain
36	chr1:85871800-85873000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr1:85871800-85873000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr1:85871800-85873000	Weak transcription	Fetal Stomach	stomach
39	chr1:85871800-85873200	Weak transcription	NHLF	lung
40	chr1:85871800-85873600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr1:85871800-85877000	Weak transcription	Ovary	ovary
42	chr1:85872000-85877200	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr1:85872200-85872600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr1:85872200-85872600	Weak transcription	Adipose Nuclei	Adipose
45	chr1:85872200-85872600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr1:85872200-85873000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr1:85872400-85872800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr1:85872400-85873200	Weak transcription	Fetal Kidney	kidney
49	chr1:85872400-85873600	Flanking Active TSS	HUVEC	blood vessel
50	chr1:85872400-85874000	Enhancers	Fetal Lung	lung

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