Variant report

Variant	rs34574981
Chromosome Location	chr14:68933183-68933184
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68714912..68718303-chr14:68931649..68935294,4	MCF-7	breast:
2	chr14:68932415..68937640-chr14:69040451..69046051,7	MCF-7	breast:
3	chr14:68931530..68935307-chr14:68935887..68938943,5	MCF-7	breast:
4	chr14:68862930..68865913-chr14:68933149..68936719,4	MCF-7	breast:
5	chr14:68410124..68413051-chr14:68932315..68935332,3	MCF-7	breast:
6	chr14:68932713..68936271-chr14:68973321..68975311,3	MCF-7	breast:
7	chr14:68929507..68933385-chr14:68987583..68991137,3	MCF-7	breast:
8	chr14:68829763..68832771-chr14:68932528..68934610,3	MCF-7	breast:
9	chr14:68931687..68934408-chr14:68934726..68938256,5	MCF-7	breast:
10	chr14:68866530..68868131-chr14:68931415..68933393,2	MCF-7	breast:
11	chr14:68748548..68751029-chr14:68932619..68934768,2	MCF-7	breast:
12	chr14:68931650..68935082-chr14:69022199..69024459,3	MCF-7	breast:
13	chr14:68930531..68933469-chr14:69030065..69032350,2	MCF-7	breast:
14	chr14:68930492..68947840-chr14:69251918..69264148,62	MCF-7	breast:
15	chr14:68932051..68934015-chr14:69017184..69019251,2	MCF-7	breast:
16	chr14:68917244..68919949-chr14:68930755..68933686,2	MCF-7	breast:
17	chr14:68924822..68938526-chr14:69257377..69265713,29	MCF-7	breast:
18	chr14:68933089..68935511-chr14:69240196..69242436,2	MCF-7	breast:
19	chr14:68932040..68933583-chr14:68933760..68935630,2	MCF-7	breast:
20	chr14:68931847..68934865-chr14:68939017..68942648,4	MCF-7	breast:
21	chr14:68932825..68935217-chr14:69176276..69178496,2	MCF-7	breast:
22	chr14:68930789..68933510-chr14:69282666..69285541,2	MCF-7	breast:
23	chr14:68721992..68725773-chr14:68931800..68936275,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000182185	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17105456	1.00[AMR][1000 genomes]
rs17105630	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2107339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35474337	1.00[AMR][1000 genomes]
rs57806531	1.00[AMR][1000 genomes]
rs58650874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58925277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60012660	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60443209	1.00[AMR][1000 genomes]
rs61064711	1.00[AMR][1000 genomes]
rs73278308	1.00[AMR][1000 genomes]
rs73278318	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278333	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278338	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278340	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278350	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68922200-68937600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr14:68924800-68936000	Enhancers	HSMM	muscle
3	chr14:68925000-68935200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr14:68926000-68935000	Weak transcription	Fetal Thymus	thymus
5	chr14:68926000-68935200	Weak transcription	Gastric	stomach
6	chr14:68926200-68933200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr14:68926200-68935000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr14:68926200-68940000	Weak transcription	Ovary	ovary
9	chr14:68926400-68933200	Enhancers	HSMMtube	muscle
10	chr14:68926400-68933400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr14:68926600-68933200	Weak transcription	Fetal Stomach	stomach
12	chr14:68926600-68935600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr14:68926800-68933200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr14:68926800-68933200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr14:68926800-68933200	Weak transcription	Fetal Intestine Small	intestine
16	chr14:68926800-68937600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr14:68927000-68936600	Weak transcription	Primary B cells from cord blood	blood
18	chr14:68927400-68933200	Weak transcription	Spleen	Spleen
19	chr14:68927400-68935000	Weak transcription	Esophagus	oesophagus
20	chr14:68927600-68933200	Weak transcription	Right Atrium	heart
21	chr14:68927600-68943800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr14:68927800-68934200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr14:68928400-68939400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr14:68928600-68949000	Weak transcription	Thymus	Thymus
25	chr14:68928800-68933200	Weak transcription	Fetal Muscle Leg	muscle
26	chr14:68929000-68937200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr14:68929400-68938000	Enhancers	HMEC	breast
28	chr14:68930600-68936200	Enhancers	HUVEC	blood vessel
29	chr14:68931200-68933200	Enhancers	Osteobl	bone
30	chr14:68931200-68933600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr14:68931200-68936200	Enhancers	NH-A	brain
32	chr14:68931400-68933600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr14:68931600-68933200	Weak transcription	HepG2	liver
34	chr14:68931600-68936200	Enhancers	Placenta	Placenta
35	chr14:68931800-68933200	Weak transcription	Liver	Liver
36	chr14:68931800-68933200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr14:68931800-68933400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr14:68931800-68934800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr14:68932200-68933200	Weak transcription	Pancreas	Pancrea
40	chr14:68932200-68934200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr14:68932200-68950000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr14:68932400-68933800	Enhancers	Hela-S3	cervix
43	chr14:68932800-68933200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr14:68932800-68933800	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr14:68932800-68938000	Enhancers	Placenta Amnion	Placenta Amnion
46	chr14:68933000-68933200	Enhancers	Adipose Nuclei	Adipose
47	chr14:68933000-68933200	Enhancers	Stomach Smooth Muscle	stomach
48	chr14:68933000-68933400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr14:68933000-68933400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr14:68933000-68933400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links