Variant report

Variant	rs73278333
Chromosome Location	chr14:68920539-68920540
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17105456	1.00[AMR][1000 genomes]
rs17105630	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105667	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105669	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2107339	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34574981	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35474337	1.00[AMR][1000 genomes]
rs4346147	1.00[AMR][1000 genomes]
rs57806531	1.00[AMR][1000 genomes]
rs58650874	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58925277	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60012660	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60443209	1.00[AMR][1000 genomes]
rs61064711	1.00[AMR][1000 genomes]
rs73278308	1.00[AMR][1000 genomes]
rs73278318	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278338	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278340	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278350	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278352	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278369	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278374	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278375	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3385565	chr14:68920278-68920597	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68911800-68921200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:68915400-68924800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68915600-68925400	Weak transcription	Colonic Mucosa	Colon
4	chr14:68916600-68921200	Weak transcription	Primary B cells from cord blood	blood
5	chr14:68916600-68924800	Weak transcription	Fetal Kidney	kidney
6	chr14:68916800-68925600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr14:68918000-68921200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr14:68918600-68921200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr14:68918600-68921200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:68918600-68921200	Weak transcription	Colon Smooth Muscle	Colon
11	chr14:68918600-68925600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr14:68918800-68921200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:68918800-68921200	Weak transcription	Fetal Lung	lung
14	chr14:68918800-68921200	Weak transcription	A549	lung
15	chr14:68918800-68921400	Weak transcription	Psoas Muscle	Psoas
16	chr14:68918800-68924600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr14:68918800-68925600	Weak transcription	Left Ventricle	heart
18	chr14:68919000-68921200	Weak transcription	Aorta	Aorta
19	chr14:68919000-68924800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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