Variant report

Variant	rs34577629
Chromosome Location	chr11:63484016-63484017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63476721..63479667-chr11:63483897..63486207,2	K562	blood:
2	chr11:63449012..63451733-chr11:63482631..63485238,2	MCF-7	breast:
3	chr11:63477261..63480849-chr11:63481201..63484303,3	K562	blood:

Variant related genes	Relation type
ENSG00000133318	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11231539	1.00[CHD][hapmap]
rs11551944	1.00[CHD][hapmap]
rs1499641	1.00[CHD][hapmap]
rs2957207	1.00[CHD][hapmap]
rs2957252	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2957253	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4391820	1.00[CHD][hapmap]
rs493672	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7123713	0.85[AMR][1000 genomes]
rs7123961	0.85[AMR][1000 genomes]
rs7129721	0.85[AMR][1000 genomes]
rs7130235	0.88[LWK][hapmap];0.85[AMR][1000 genomes]
rs7131365	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv897628	chr11:63456478-63508334	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63450800-63517400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr11:63451200-63486400	Weak transcription	Primary T cells from cord blood	blood
3	chr11:63452000-63486400	Weak transcription	Fetal Thymus	thymus
4	chr11:63456800-63490000	Weak transcription	Primary B cells from cord blood	blood
5	chr11:63459600-63516600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:63463200-63516200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr11:63464200-63489600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr11:63466200-63490000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:63466800-63486800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr11:63467400-63486600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:63467400-63497200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:63467600-63485800	Weak transcription	Hela-S3	cervix
13	chr11:63467600-63486200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:63467600-63486400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:63467600-63486400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:63467600-63486400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:63467600-63488200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr11:63467600-63489200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr11:63467600-63489800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:63467600-63516000	Weak transcription	Thymus	Thymus
21	chr11:63467600-63517600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr11:63467800-63486200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr11:63467800-63486400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr11:63469200-63486400	Weak transcription	Psoas Muscle	Psoas
25	chr11:63469400-63497600	Weak transcription	Left Ventricle	heart
26	chr11:63472400-63486000	Weak transcription	GM12878-XiMat	blood
27	chr11:63473000-63488800	Weak transcription	Esophagus	oesophagus
28	chr11:63473000-63516000	Weak transcription	Lung	lung
29	chr11:63473000-63518000	Weak transcription	Aorta	Aorta
30	chr11:63473000-63529400	Weak transcription	Right Ventricle	heart
31	chr11:63473200-63487200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:63473200-63487800	Weak transcription	Brain Germinal Matrix	brain
33	chr11:63473400-63485800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr11:63474800-63501200	Weak transcription	Fetal Stomach	stomach
35	chr11:63476600-63486400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:63477000-63486600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr11:63477000-63487600	Weak transcription	NH-A	brain
38	chr11:63477200-63486200	Weak transcription	NHEK	skin
39	chr11:63477400-63486600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr11:63477400-63498000	Weak transcription	NHLF	lung
41	chr11:63477800-63487200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr11:63478200-63486400	Weak transcription	Primary hematopoietic stem cells	blood
43	chr11:63478200-63486600	Weak transcription	Brain Angular Gyrus	brain
44	chr11:63478400-63485600	Weak transcription	HSMM	muscle
45	chr11:63478400-63486200	Weak transcription	Brain Hippocampus Middle	brain
46	chr11:63478400-63486800	Weak transcription	NHDF-Ad	bronchial
47	chr11:63478400-63487200	Weak transcription	Brain Anterior Caudate	brain
48	chr11:63478400-63488600	Weak transcription	HSMMtube	muscle
49	chr11:63478400-63492400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr11:63478400-63493600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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