Variant report

Variant	rs11551944
Chromosome Location	chr11:63449125-63449126
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63448835..63449499-chr2:202315682..202316315,2	NB4	blood:
2	chr11:63448971..63451551-chr11:63580454..63582597,3	K562	blood:
3	chr11:63448433..63450447-chr11:63465471..63468960,4	MCF-7	breast:
4	chr11:63436203..63440489-chr11:63447864..63452214,13	MCF-7	breast:
5	chr11:58873708..58874686-chr11:63448916..63449711,2	Hela-S3	cervix:
6	chr1:228645098..228645640-chr11:63448722..63449298,2	Hela-S3	cervix:
7	chr11:63437875..63444495-chr11:63445155..63450267,13	K562	blood:
8	chr11:63447360..63451086-chr11:63465543..63470477,5	MCF-7	breast:
9	chr11:63448958..63449551-chrX:53448541..53449514,2	Hela-S3	cervix:
10	chr11:63448182..63450282-chr11:63533461..63536298,4	MCF-7	breast:
11	chr11:63448964..63449498-chr19:5690308..5690831,2	Hela-S3	cervix:
12	chr11:63448949..63449920-chr14:75745228..75745824,2	Hela-S3	cervix:
13	chr11:63448263..63450575-chr11:63740636..63743421,3	MCF-7	breast:
14	chr11:63448677..63449649-chr9:135819472..135820015,2	Hela-S3	cervix:
15	chr11:63448840..63449343-chr12:46662367..46663264,2	Hela-S3	cervix:
16	chr11:63436138..63441406-chr11:63446930..63451361,18	MCF-7	breast:
17	chr11:63448233..63451551-chr11:63578408..63582128,5	K562	blood:
18	chr11:63374200..63376653-chr11:63448488..63450702,2	K562	blood:
19	chr11:63437372..63440690-chr11:63447067..63450757,11	K562	blood:
20	chr11:63449048..63450898-chr11:63534933..63537043,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000188070	Chromatin interaction
ENSG00000168005	Chromatin interaction
ENSG00000176340	Chromatin interaction
ENSG00000072501	Chromatin interaction
ENSG00000130255	Chromatin interaction
ENSG00000176485	Chromatin interaction
ENSG00000170345	Chromatin interaction
ENSG00000181218	Chromatin interaction
ENSG00000165699	Chromatin interaction
ENSG00000255651	Chromatin interaction
ENSG00000184743	Chromatin interaction
ENSG00000271100	Chromatin interaction
ENSG00000189057	Chromatin interaction
ENSG00000115993	Chromatin interaction
ENSG00000111371	Chromatin interaction
ENSG00000256100	Chromatin interaction

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10501394	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231535	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231539	1.00[CHD][hapmap]
rs11231543	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231545	0.91[CEU][hapmap]
rs11551942	0.91[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11820129	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1186941	0.91[CEU][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1211688	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274980	0.90[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158453	0.91[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17656941	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1789219	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509744	0.91[CEU][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957207	1.00[CHD][hapmap]
rs2959876	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959880	0.91[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959881	0.89[EUR][1000 genomes]
rs2959886	0.91[EUR][1000 genomes]
rs3016865	0.91[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34109368	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34577629	1.00[CHD][hapmap]
rs35345497	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35754698	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4391820	1.00[CHD][hapmap]
rs476034	0.91[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476691	0.91[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482915	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484619	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs491231	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500726	0.97[EUR][1000 genomes]
rs500991	0.91[CEU][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511819	0.91[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs515645	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517700	0.91[CEU][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518490	0.91[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518692	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs521464	0.91[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523093	0.91[CEU][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523809	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534505	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534876	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs539306	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541809	0.98[EUR][1000 genomes]
rs550629	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551466	0.91[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs557882	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559405	1.00[EUR][1000 genomes]
rs560938	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs562549	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566813	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567756	0.91[CEU][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568769	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568790	0.91[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580695	0.91[CEU][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs588523	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928162	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928163	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928165	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928166	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928167	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928168	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928195	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928196	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928197	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928202	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928203	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928204	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928205	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928206	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928208	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928209	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928211	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928212	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928214	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928234	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928236	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928237	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928238	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928239	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928241	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928243	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928244	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928245	0.92[EUR][1000 genomes]
rs61928246	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928247	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928248	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61929731	0.86[EUR][1000 genomes]
rs6591821	0.94[EUR][1000 genomes]
rs6591822	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106670	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111395	0.91[CEU][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117206	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119961	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127454	0.91[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128040	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128970	0.91[CEU][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928900	0.91[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931908	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932117	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939940	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943981	0.91[CEU][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944003	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944094	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945972	0.91[CEU][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949389	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949447	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63448000-63449200	Active TSS	Brain Germinal Matrix	brain
2	chr11:63448000-63450600	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr11:63448200-63450400	Active TSS	Colonic Mucosa	Colon
4	chr11:63448200-63450600	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr11:63448200-63450800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:63448200-63450800	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr11:63448400-63449400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:63448400-63449800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:63448400-63450200	Active TSS	Left Ventricle	heart
10	chr11:63448400-63450200	Active TSS	Psoas Muscle	Psoas
11	chr11:63448400-63450400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr11:63448400-63450400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:63448400-63450400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:63448400-63450400	Active TSS	Esophagus	oesophagus
15	chr11:63448400-63450400	Active TSS	Gastric	stomach
16	chr11:63448400-63450400	Active TSS	Ovary	ovary
17	chr11:63448400-63450600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:63448400-63450600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:63448400-63450600	Active TSS	Aorta	Aorta
20	chr11:63448400-63450600	Active TSS	Fetal Muscle Trunk	muscle
21	chr11:63448400-63450800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:63448400-63451000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:63448400-63451000	Active TSS	NHLF	lung
24	chr11:63448600-63449200	Active TSS	Fetal Brain Female	brain
25	chr11:63448600-63449400	Active TSS	Primary T cells from cord blood	blood
26	chr11:63448600-63449400	Transcr. at gene 5' and 3'	Right Atrium	heart
27	chr11:63448600-63449600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
28	chr11:63448600-63449600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:63448600-63449600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
30	chr11:63448600-63449600	Active TSS	Fetal Lung	lung
31	chr11:63448600-63449800	Active TSS	NH-A	brain
32	chr11:63448600-63450000	Active TSS	Placenta Amnion	Placenta Amnion
33	chr11:63448600-63450000	Active TSS	Stomach Mucosa	stomach
34	chr11:63448600-63450000	Active TSS	Spleen	Spleen
35	chr11:63448600-63450200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:63448600-63450200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:63448600-63450200	Active TSS	Brain Hippocampus Middle	brain
38	chr11:63448600-63450200	Active TSS	Brain Substantia Nigra	brain
39	chr11:63448600-63450200	Active TSS	Fetal Stomach	stomach
40	chr11:63448600-63450200	Active TSS	Rectal Smooth Muscle	rectum
41	chr11:63448600-63450200	Active TSS	Right Ventricle	heart
42	chr11:63448600-63450200	Active TSS	Sigmoid Colon	Sigmoid Colon
43	chr11:63448600-63450400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:63448600-63450400	Active TSS	Colon Smooth Muscle	Colon
45	chr11:63448600-63450400	Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr11:63448600-63450400	Active TSS	Fetal Heart	heart
47	chr11:63448600-63450400	Active TSS	Pancreas	Pancrea
48	chr11:63448600-63450400	Active TSS	A549	lung
49	chr11:63448600-63450600	Active TSS	H9 Cell Line	embryonic stem cell
50	chr11:63448600-63450600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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