Variant report

Variant	rs7928900
Chromosome Location	chr11:63455476-63455477
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63447764..63451579-chr11:63451770..63456201,6	MCF-7	breast:
2	chr11:63455435..63460704-chr11:63461095..63464414,6	K562	blood:

Variant related genes	Relation type
ENSG00000133318	Chromatin interaction

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10501394	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231535	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231543	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231545	1.00[CEU][hapmap]
rs11551942	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11551944	0.91[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11820129	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1186941	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1211688	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274980	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158453	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17656941	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1789219	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509744	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959876	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959880	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959881	0.86[EUR][1000 genomes]
rs2959886	0.94[EUR][1000 genomes]
rs3016865	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34109368	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35345497	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35754698	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476034	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476691	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482915	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484619	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs491231	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500726	1.00[EUR][1000 genomes]
rs500991	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511819	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs515645	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517700	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518490	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518692	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs521464	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523093	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523809	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534505	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534876	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs539306	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541809	0.94[EUR][1000 genomes]
rs550629	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551466	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs557882	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559405	0.97[EUR][1000 genomes]
rs560938	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs562549	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566813	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567756	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568769	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568790	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580695	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs588523	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928162	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928163	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928165	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928166	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928167	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928168	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928195	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928196	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928197	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928202	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928203	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928204	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928208	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928209	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928211	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928212	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928214	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928234	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928236	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928237	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928238	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928239	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928241	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928243	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928244	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928245	0.91[EUR][1000 genomes]
rs61928246	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928247	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928248	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61929731	0.83[EUR][1000 genomes]
rs6591821	0.93[EUR][1000 genomes]
rs6591822	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106670	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111395	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117206	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119961	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127454	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128040	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128970	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931908	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939940	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943981	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944003	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944094	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945972	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949389	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949447	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63449600-63455600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr11:63450400-63456000	Weak transcription	Placenta	Placenta
3	chr11:63450400-63466400	Weak transcription	Small Intestine	intestine
4	chr11:63450600-63469200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:63450800-63460400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:63450800-63465400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:63450800-63465800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:63450800-63517400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr11:63451000-63466800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:63451000-63466800	Weak transcription	Stomach Mucosa	stomach
11	chr11:63451000-63467000	Weak transcription	Thymus	Thymus
12	chr11:63451200-63466400	Weak transcription	Fetal Intestine Large	intestine
13	chr11:63451200-63466800	Weak transcription	Fetal Kidney	kidney
14	chr11:63451200-63475000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:63451200-63478000	Weak transcription	HSMM	muscle
16	chr11:63451200-63486400	Weak transcription	Primary T cells from cord blood	blood
17	chr11:63451400-63455800	Enhancers	Fetal Brain Male	brain
18	chr11:63451400-63456400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:63451400-63457000	Weak transcription	HUVEC	blood vessel
20	chr11:63451400-63466800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr11:63451400-63478000	Weak transcription	HSMMtube	muscle
22	chr11:63451600-63455800	Enhancers	Adipose Nuclei	Adipose
23	chr11:63452000-63486400	Weak transcription	Fetal Thymus	thymus
24	chr11:63452200-63455600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:63452200-63455600	Genic enhancers	Dnd41	blood
26	chr11:63452200-63456600	Weak transcription	HepG2	liver
27	chr11:63452400-63455800	Enhancers	Brain Substantia Nigra	brain
28	chr11:63452400-63458000	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr11:63452600-63469000	Weak transcription	Left Ventricle	heart
30	chr11:63452800-63456800	Enhancers	K562	blood
31	chr11:63452800-63459400	Weak transcription	Fetal Stomach	stomach
32	chr11:63452800-63465400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:63452800-63466800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:63452800-63466800	Weak transcription	Lung	lung
35	chr11:63452800-63469000	Weak transcription	Fetal Intestine Small	intestine
36	chr11:63453000-63456000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:63453000-63459200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr11:63453000-63472800	Weak transcription	Pancreas	Pancrea
39	chr11:63453200-63456600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr11:63453200-63457800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:63453200-63466800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:63453400-63467000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:63453400-63471800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr11:63453600-63456600	Weak transcription	A549	lung
45	chr11:63453600-63467000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:63453600-63467200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr11:63454000-63455600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:63454000-63455600	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr11:63454000-63455600	Enhancers	GM12878-XiMat	blood
50	chr11:63454000-63456400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links