Variant report

Variant	rs500726
Chromosome Location	chr11:63460811-63460812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63450989..63453241-chr11:63460723..63463208,2	K562	blood:
2	chr11:63447407..63449476-chr11:63459423..63460983,2	K562	blood:
3	chr11:63459148..63462925-chr11:63465631..63468720,3	K562	blood:
4	chr11:63459746..63461440-chr11:63466054..63468987,2	K562	blood:

Variant related genes	Relation type
ENSG00000133318	Chromatin interaction
ENSG00000271100	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10501394	0.91[EUR][1000 genomes]
rs11231535	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11231543	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11551942	0.98[EUR][1000 genomes]
rs11551944	0.97[EUR][1000 genomes]
rs11820129	0.93[EUR][1000 genomes]
rs1186941	0.98[EUR][1000 genomes]
rs1211688	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12274980	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17158453	0.91[EUR][1000 genomes]
rs17656941	0.91[EUR][1000 genomes]
rs1789219	0.93[EUR][1000 genomes]
rs2509744	0.98[EUR][1000 genomes]
rs2959876	0.91[EUR][1000 genomes]
rs2959880	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2959881	0.86[EUR][1000 genomes]
rs2959886	0.94[EUR][1000 genomes]
rs3016865	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34109368	0.89[EUR][1000 genomes]
rs35345497	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35754698	0.91[EUR][1000 genomes]
rs476034	0.91[EUR][1000 genomes]
rs476691	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs482915	0.93[EUR][1000 genomes]
rs484619	0.91[EUR][1000 genomes]
rs491231	0.98[EUR][1000 genomes]
rs500991	0.98[EUR][1000 genomes]
rs511819	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs515645	0.89[EUR][1000 genomes]
rs517700	0.93[EUR][1000 genomes]
rs518490	0.91[EUR][1000 genomes]
rs518692	0.97[EUR][1000 genomes]
rs521464	0.98[EUR][1000 genomes]
rs523093	0.93[EUR][1000 genomes]
rs523809	0.93[EUR][1000 genomes]
rs534505	0.89[EUR][1000 genomes]
rs534876	0.97[EUR][1000 genomes]
rs539306	0.91[EUR][1000 genomes]
rs541809	0.94[EUR][1000 genomes]
rs550629	0.91[EUR][1000 genomes]
rs551466	0.91[EUR][1000 genomes]
rs557882	0.93[EUR][1000 genomes]
rs559405	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs560938	0.89[EUR][1000 genomes]
rs562549	0.91[EUR][1000 genomes]
rs566813	0.92[EUR][1000 genomes]
rs567756	0.98[EUR][1000 genomes]
rs568769	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs568790	0.98[EUR][1000 genomes]
rs580695	0.98[EUR][1000 genomes]
rs588523	0.94[EUR][1000 genomes]
rs61928162	0.91[EUR][1000 genomes]
rs61928163	0.91[EUR][1000 genomes]
rs61928165	0.91[EUR][1000 genomes]
rs61928166	0.91[EUR][1000 genomes]
rs61928167	0.91[EUR][1000 genomes]
rs61928168	0.91[EUR][1000 genomes]
rs61928195	0.91[EUR][1000 genomes]
rs61928196	0.91[EUR][1000 genomes]
rs61928197	0.89[EUR][1000 genomes]
rs61928202	1.00[EUR][1000 genomes]
rs61928203	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61928204	1.00[EUR][1000 genomes]
rs61928205	1.00[EUR][1000 genomes]
rs61928206	1.00[EUR][1000 genomes]
rs61928208	0.93[EUR][1000 genomes]
rs61928209	0.93[EUR][1000 genomes]
rs61928211	0.93[EUR][1000 genomes]
rs61928212	0.93[EUR][1000 genomes]
rs61928214	0.98[EUR][1000 genomes]
rs61928234	0.98[EUR][1000 genomes]
rs61928236	0.98[EUR][1000 genomes]
rs61928237	0.96[EUR][1000 genomes]
rs61928238	0.95[EUR][1000 genomes]
rs61928239	0.95[EUR][1000 genomes]
rs61928241	0.93[EUR][1000 genomes]
rs61928243	0.93[EUR][1000 genomes]
rs61928244	0.93[EUR][1000 genomes]
rs61928245	0.91[EUR][1000 genomes]
rs61928246	0.93[EUR][1000 genomes]
rs61928247	0.93[EUR][1000 genomes]
rs61928248	0.92[EUR][1000 genomes]
rs61929731	0.83[EUR][1000 genomes]
rs6591821	0.93[EUR][1000 genomes]
rs6591822	0.93[EUR][1000 genomes]
rs7106670	0.98[EUR][1000 genomes]
rs7111395	0.93[EUR][1000 genomes]
rs7117206	0.93[EUR][1000 genomes]
rs7119961	0.98[EUR][1000 genomes]
rs7127454	0.93[EUR][1000 genomes]
rs7128040	0.95[EUR][1000 genomes]
rs7128970	0.93[EUR][1000 genomes]
rs7928900	1.00[EUR][1000 genomes]
rs7931908	0.91[EUR][1000 genomes]
rs7932117	1.00[EUR][1000 genomes]
rs7939940	0.88[EUR][1000 genomes]
rs7943981	0.93[EUR][1000 genomes]
rs7944003	0.93[EUR][1000 genomes]
rs7944094	0.93[EUR][1000 genomes]
rs7945972	0.93[EUR][1000 genomes]
rs7949389	0.94[EUR][1000 genomes]
rs7949447	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv897628	chr11:63456478-63508334	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv975850	chr11:63458107-63462594	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63450400-63466400	Weak transcription	Small Intestine	intestine
2	chr11:63450600-63469200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:63450800-63465400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:63450800-63465800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:63450800-63517400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:63451000-63466800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr11:63451000-63466800	Weak transcription	Stomach Mucosa	stomach
8	chr11:63451000-63467000	Weak transcription	Thymus	Thymus
9	chr11:63451200-63466400	Weak transcription	Fetal Intestine Large	intestine
10	chr11:63451200-63466800	Weak transcription	Fetal Kidney	kidney
11	chr11:63451200-63475000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr11:63451200-63478000	Weak transcription	HSMM	muscle
13	chr11:63451200-63486400	Weak transcription	Primary T cells from cord blood	blood
14	chr11:63451400-63466800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:63451400-63478000	Weak transcription	HSMMtube	muscle
16	chr11:63452000-63486400	Weak transcription	Fetal Thymus	thymus
17	chr11:63452600-63469000	Weak transcription	Left Ventricle	heart
18	chr11:63452800-63465400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:63452800-63466800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:63452800-63466800	Weak transcription	Lung	lung
21	chr11:63452800-63469000	Weak transcription	Fetal Intestine Small	intestine
22	chr11:63453000-63472800	Weak transcription	Pancreas	Pancrea
23	chr11:63453200-63466800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr11:63453400-63467000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:63453400-63471800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr11:63453600-63467000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:63453600-63467200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr11:63454400-63464000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:63454400-63465200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr11:63454400-63466400	Weak transcription	Psoas Muscle	Psoas
31	chr11:63454400-63466400	Weak transcription	Right Atrium	heart
32	chr11:63454600-63466800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:63454800-63467000	Weak transcription	Liver	Liver
34	chr11:63454800-63476600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr11:63455000-63466600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:63455000-63466600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr11:63455200-63466800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr11:63455400-63467200	Weak transcription	Brain Germinal Matrix	brain
39	chr11:63455600-63462600	Weak transcription	GM12878-XiMat	blood
40	chr11:63455600-63465800	Weak transcription	Colon Smooth Muscle	Colon
41	chr11:63455600-63466200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:63455600-63466800	Weak transcription	NHDF-Ad	bronchial
43	chr11:63455600-63467000	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr11:63455600-63468600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:63455600-63472600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:63455600-63476200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:63455800-63471800	Weak transcription	Osteobl	bone
48	chr11:63456800-63490000	Weak transcription	Primary B cells from cord blood	blood
49	chr11:63457000-63462000	Weak transcription	Brain Hippocampus Middle	brain
50	chr11:63457000-63462600	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links