Variant report
Variant | rs61928245 |
---|---|
Chromosome Location | chr11:63552054-63552055 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
1
No data |
No data |
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Variant related genes | Relation type |
---|---|
ENSG00000168005 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10501394 | 0.87[EUR][1000 genomes] |
rs11231535 | 0.86[EUR][1000 genomes] |
rs11231543 | 0.87[EUR][1000 genomes] |
rs11551942 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs11551944 | 0.92[EUR][1000 genomes] |
rs11820129 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs1186941 | 0.93[EUR][1000 genomes] |
rs1211688 | 0.89[EUR][1000 genomes] |
rs12274980 | 0.87[EUR][1000 genomes] |
rs17158453 | 0.87[EUR][1000 genomes] |
rs17656941 | 0.87[EUR][1000 genomes] |
rs1789219 | 0.98[EUR][1000 genomes] |
rs2509744 | 0.93[EUR][1000 genomes] |
rs2959876 | 0.87[EUR][1000 genomes] |
rs2959880 | 0.90[EUR][1000 genomes] |
rs2959881 | 0.82[EUR][1000 genomes] |
rs2959886 | 0.90[EUR][1000 genomes] |
rs3016865 | 0.90[EUR][1000 genomes] |
rs3017733 | 0.81[EUR][1000 genomes] |
rs34109368 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs35345497 | 0.87[EUR][1000 genomes] |
rs35754698 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs476034 | 0.96[EUR][1000 genomes] |
rs476691 | 0.87[EUR][1000 genomes] |
rs482915 | 0.89[EUR][1000 genomes] |
rs484619 | 0.95[EUR][1000 genomes] |
rs491231 | 0.93[EUR][1000 genomes] |
rs500726 | 0.91[EUR][1000 genomes] |
rs500991 | 0.93[EUR][1000 genomes] |
rs511819 | 0.91[EUR][1000 genomes] |
rs515645 | 0.93[EUR][1000 genomes] |
rs517700 | 0.93[EUR][1000 genomes] |
rs518490 | 0.87[EUR][1000 genomes] |
rs518692 | 0.92[EUR][1000 genomes] |
rs521464 | 0.93[EUR][1000 genomes] |
rs523093 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs523809 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs534505 | 0.85[EUR][1000 genomes] |
rs534876 | 0.94[EUR][1000 genomes] |
rs539306 | 0.87[EUR][1000 genomes] |
rs541809 | 0.90[EUR][1000 genomes] |
rs550629 | 0.87[EUR][1000 genomes] |
rs551466 | 0.87[EUR][1000 genomes] |
rs557882 | 0.98[EUR][1000 genomes] |
rs559405 | 0.92[EUR][1000 genomes] |
rs560938 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs562549 | 0.87[EUR][1000 genomes] |
rs566813 | 0.97[EUR][1000 genomes] |
rs567756 | 0.93[EUR][1000 genomes] |
rs568769 | 0.91[EUR][1000 genomes] |
rs568790 | 0.93[EUR][1000 genomes] |
rs580695 | 0.93[EUR][1000 genomes] |
rs588523 | 0.94[EUR][1000 genomes] |
rs61928162 | 0.87[EUR][1000 genomes] |
rs61928163 | 0.87[EUR][1000 genomes] |
rs61928165 | 0.87[EUR][1000 genomes] |
rs61928166 | 0.87[EUR][1000 genomes] |
rs61928167 | 0.87[EUR][1000 genomes] |
rs61928168 | 0.87[EUR][1000 genomes] |
rs61928195 | 0.87[EUR][1000 genomes] |
rs61928196 | 0.87[EUR][1000 genomes] |
rs61928197 | 0.87[EUR][1000 genomes] |
rs61928202 | 0.91[EUR][1000 genomes] |
rs61928203 | 0.87[EUR][1000 genomes] |
rs61928204 | 0.91[EUR][1000 genomes] |
rs61928205 | 0.91[EUR][1000 genomes] |
rs61928206 | 0.91[EUR][1000 genomes] |
rs61928208 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs61928209 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs61928211 | 0.93[EUR][1000 genomes] |
rs61928212 | 0.93[EUR][1000 genomes] |
rs61928214 | 0.93[EUR][1000 genomes] |
rs61928234 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs61928236 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs61928237 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs61928238 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs61928239 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs61928241 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs61928243 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs61928244 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs61928246 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs61928247 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs61928248 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs61929731 | 0.81[EUR][1000 genomes] |
rs6591821 | 0.98[EUR][1000 genomes] |
rs6591822 | 0.98[EUR][1000 genomes] |
rs7106670 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs7111395 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs7117206 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs7119961 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs7127454 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs7128040 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs7128970 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs7928900 | 0.91[EUR][1000 genomes] |
rs7931908 | 0.87[EUR][1000 genomes] |
rs7932117 | 0.91[EUR][1000 genomes] |
rs7939940 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs7943981 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs7944003 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs7944094 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs7945972 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs7949389 | 0.90[EUR][1000 genomes] |
rs7949447 | 0.87[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1051171 | chr11:62987064-63835715 | Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 100 gene(s) | inside rSNPs | diseases |
2 | nsv832183 | chr11:63416678-63564565 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
3 | nsv468589 | chr11:63515752-63713239 | Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
4 | nsv555180 | chr11:63515752-63713239 | Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
5 | esv3413647 | chr11:63550425-63582789 | Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:63550200-63552200 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
2 | chr11:63551600-63552200 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
3 | chr11:63551600-63552200 | Enhancers | H1 Cell Line | embryonic stem cell |
4 | chr11:63551600-63552200 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
5 | chr11:63551600-63552200 | Enhancers | HUES64 Cell Line | embryonic stem cell |
6 | chr11:63551600-63552200 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
7 | chr11:63551600-63552200 | Flanking Active TSS | HepG2 | liver |
8 | chr11:63551800-63552200 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
9 | chr11:63551800-63552200 | Enhancers | Fetal Stomach | stomach |
10 | chr11:63552000-63552200 | Enhancers | Fetal Kidney | kidney |
11 | chr11:63552000-63555600 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
12 | chr11:63552000-63556400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |