Variant report

Variant	rs568769
Chromosome Location	chr11:63453743-63453744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63439157..63441385-chr11:63453594..63455279,2	MCF-7	breast:
2	chr11:63447764..63451579-chr11:63451770..63456201,6	MCF-7	breast:
3	chr11:63448656..63451027-chr11:63451543..63454650,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184743	Chromatin interaction
ENSG00000133318	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10501394	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231535	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231543	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11551942	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11551944	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11820129	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1186941	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1211688	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274980	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158453	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17656941	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1789219	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509744	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959876	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959880	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959881	0.86[EUR][1000 genomes]
rs2959886	0.94[EUR][1000 genomes]
rs3016865	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34109368	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35345497	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35754698	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476034	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476691	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482915	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484619	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs491231	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500726	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs500991	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511819	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs515645	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517700	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518490	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518692	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs521464	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523093	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523809	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534505	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534876	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs539306	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541809	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs550629	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551466	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs557882	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559405	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs560938	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs562549	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566813	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567756	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568790	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580695	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs588523	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928162	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928163	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928165	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928166	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928167	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928168	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928195	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928196	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928197	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928202	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928203	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928204	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928205	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928206	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928208	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928209	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928211	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928212	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928214	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928234	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928236	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928237	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928238	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928239	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928241	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928243	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928244	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928245	0.91[EUR][1000 genomes]
rs61928246	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928247	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928248	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61929731	0.83[EUR][1000 genomes]
rs6591821	0.93[EUR][1000 genomes]
rs6591822	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106670	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111395	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117206	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119961	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127454	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128040	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128970	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928900	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931908	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932117	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939940	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943981	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944003	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944094	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945972	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949389	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949447	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63449600-63455600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr11:63450400-63454000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:63450400-63454800	Weak transcription	Gastric	stomach
4	chr11:63450400-63455200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:63450400-63456000	Weak transcription	Placenta	Placenta
6	chr11:63450400-63466400	Weak transcription	Small Intestine	intestine
7	chr11:63450600-63454200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:63450600-63454200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr11:63450600-63469200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:63450800-63454000	Weak transcription	Psoas Muscle	Psoas
11	chr11:63450800-63454200	Weak transcription	Liver	Liver
12	chr11:63450800-63460400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:63450800-63465400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:63450800-63465800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:63450800-63517400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:63451000-63454400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr11:63451000-63454600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr11:63451000-63466800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr11:63451000-63466800	Weak transcription	Stomach Mucosa	stomach
20	chr11:63451000-63467000	Weak transcription	Thymus	Thymus
21	chr11:63451200-63454000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:63451200-63454000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:63451200-63454200	Weak transcription	Brain Hippocampus Middle	brain
24	chr11:63451200-63454200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:63451200-63454400	Weak transcription	NHEK	skin
26	chr11:63451200-63454400	Weak transcription	Osteobl	bone
27	chr11:63451200-63454600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:63451200-63454600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:63451200-63454600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:63451200-63454800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:63451200-63455000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:63451200-63466400	Weak transcription	Fetal Intestine Large	intestine
33	chr11:63451200-63466800	Weak transcription	Fetal Kidney	kidney
34	chr11:63451200-63475000	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr11:63451200-63478000	Weak transcription	HSMM	muscle
36	chr11:63451200-63486400	Weak transcription	Primary T cells from cord blood	blood
37	chr11:63451400-63454000	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr11:63451400-63454000	Weak transcription	GM12878-XiMat	blood
39	chr11:63451400-63454400	Weak transcription	NHDF-Ad	bronchial
40	chr11:63451400-63454600	Weak transcription	Colon Smooth Muscle	Colon
41	chr11:63451400-63455400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr11:63451400-63455400	Weak transcription	NHLF	lung
43	chr11:63451400-63455800	Enhancers	Fetal Brain Male	brain
44	chr11:63451400-63456400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:63451400-63457000	Weak transcription	HUVEC	blood vessel
46	chr11:63451400-63466800	Weak transcription	Duodenum Mucosa	Duodenum
47	chr11:63451400-63478000	Weak transcription	HSMMtube	muscle
48	chr11:63451600-63455800	Enhancers	Adipose Nuclei	Adipose
49	chr11:63452000-63454600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr11:63452000-63455400	Enhancers	Brain Germinal Matrix	brain

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