Variant report

Variant	rs11231543
Chromosome Location	chr11:63408222-63408223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63406474..63408349-chr11:63438627..63440154,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184743	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10501394	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231535	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11551942	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11551944	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11820129	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1186941	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1211688	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158453	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17656941	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1789219	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509744	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959876	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959880	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959881	0.88[EUR][1000 genomes]
rs2959886	0.86[EUR][1000 genomes]
rs3016865	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34109368	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35345497	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35754698	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476034	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476691	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482915	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484619	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs491231	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500726	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs500991	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511819	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs515645	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517700	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518490	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518692	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs521464	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523093	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523809	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534505	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534876	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs539306	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541809	0.97[EUR][1000 genomes]
rs550629	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551466	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs557882	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559405	0.94[EUR][1000 genomes]
rs560938	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs562549	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566813	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567756	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568769	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568790	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580695	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs588523	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928162	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928163	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928165	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928166	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928167	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928168	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928195	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928196	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928197	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928202	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928203	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928204	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928205	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928206	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928208	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928209	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928211	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928212	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928214	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928234	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928236	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928237	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928238	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928239	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928241	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928243	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928244	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928245	0.87[EUR][1000 genomes]
rs61928246	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928247	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928248	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61929725	0.81[EUR][1000 genomes]
rs61929728	0.81[EUR][1000 genomes]
rs61929731	0.91[EUR][1000 genomes]
rs6591821	0.89[EUR][1000 genomes]
rs6591822	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106670	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111395	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117206	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119961	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127454	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128040	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128970	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7482863	0.82[EUR][1000 genomes]
rs7928900	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931908	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932117	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939940	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943981	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944003	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944094	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945972	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949389	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63382400-63409800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:63388800-63414200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:63390600-63409600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:63390800-63414200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:63391200-63410400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:63391200-63418600	Weak transcription	Psoas Muscle	Psoas
7	chr11:63393800-63426600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:63394000-63409200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:63394200-63409400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:63395000-63426800	Strong transcription	Dnd41	blood
11	chr11:63395600-63421000	Strong transcription	Fetal Muscle Trunk	muscle
12	chr11:63397400-63409000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr11:63397800-63430800	Weak transcription	Fetal Brain Male	brain
14	chr11:63398800-63408400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:63398800-63409000	Weak transcription	Brain Germinal Matrix	brain
16	chr11:63398800-63409600	Weak transcription	Brain Anterior Caudate	brain
17	chr11:63398800-63412400	Weak transcription	Pancreas	Pancrea
18	chr11:63398800-63420200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:63398800-63421400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:63398800-63426800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:63399000-63408400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr11:63399000-63408800	Weak transcription	Colonic Mucosa	Colon
23	chr11:63399000-63434000	Weak transcription	Small Intestine	intestine
24	chr11:63399200-63433800	Weak transcription	Fetal Heart	heart
25	chr11:63399600-63410600	Weak transcription	Right Ventricle	heart
26	chr11:63399800-63408800	Weak transcription	Fetal Intestine Large	intestine
27	chr11:63399800-63409000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:63399800-63410600	Weak transcription	Brain Substantia Nigra	brain
29	chr11:63399800-63437800	Weak transcription	Fetal Brain Female	brain
30	chr11:63400000-63408800	Weak transcription	Left Ventricle	heart
31	chr11:63400000-63409600	Weak transcription	Brain Angular Gyrus	brain
32	chr11:63400400-63437600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:63400600-63408400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr11:63400600-63408800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr11:63400600-63409000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr11:63400600-63409000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:63400600-63431000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:63400800-63412400	Weak transcription	Aorta	Aorta
39	chr11:63401200-63408800	Weak transcription	Lung	lung
40	chr11:63401200-63409400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr11:63401200-63410400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr11:63401400-63408400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr11:63402000-63416000	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr11:63402400-63409000	Weak transcription	Stomach Mucosa	stomach
45	chr11:63403200-63408400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr11:63403400-63408400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr11:63403400-63410200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:63403400-63410200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr11:63403400-63412400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr11:63403400-63415600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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