Variant report

Variant	rs7931908
Chromosome Location	chr11:63388296-63388297
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63380134..63381907-chr11:63387073..63388722,2	K562	blood:

Variant related genes	Relation type
ENSG00000176485	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10501394	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231535	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231543	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11551942	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11551944	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11820129	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1186941	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1211688	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274980	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17656941	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1789219	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509744	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959876	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959880	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959881	0.88[EUR][1000 genomes]
rs2959886	0.86[EUR][1000 genomes]
rs3016865	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34109368	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35345497	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35754698	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476034	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476691	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482915	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484619	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs491231	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500726	0.91[EUR][1000 genomes]
rs500991	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511819	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs515645	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517700	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518692	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs521464	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523093	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523809	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534505	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534876	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs539306	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541809	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs550629	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551466	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs557882	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559405	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs560938	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs562549	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566813	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567756	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568769	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568790	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580695	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs588523	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928162	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928163	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928166	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928167	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928168	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928195	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928196	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928197	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928202	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928203	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928204	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928205	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928206	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928208	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928209	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928211	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928212	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928214	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928234	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928236	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928237	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928238	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928239	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928241	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928243	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928244	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928245	0.87[EUR][1000 genomes]
rs61928246	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928247	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928248	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61929725	0.81[EUR][1000 genomes]
rs61929728	0.81[EUR][1000 genomes]
rs61929731	0.91[EUR][1000 genomes]
rs6591821	0.89[EUR][1000 genomes]
rs6591822	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106670	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111395	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117206	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119961	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127454	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128040	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128970	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7482863	0.82[EUR][1000 genomes]
rs7928900	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932117	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939940	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943981	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944003	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944094	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945972	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949389	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63382000-63398400	Weak transcription	Small Intestine	intestine
2	chr11:63382200-63388400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:63382200-63396400	Weak transcription	Spleen	Spleen
4	chr11:63382400-63388400	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:63382400-63389600	Weak transcription	A549	lung
6	chr11:63382400-63389800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:63382400-63389800	Weak transcription	Adipose Nuclei	Adipose
8	chr11:63382400-63389800	Weak transcription	Brain Anterior Caudate	brain
9	chr11:63382400-63389800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:63382400-63390000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:63382400-63393800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:63382400-63394200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr11:63382400-63396400	Weak transcription	Left Ventricle	heart
14	chr11:63382400-63398400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:63382400-63409800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr11:63385000-63389800	Weak transcription	HepG2	liver
17	chr11:63386200-63388400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:63386200-63395600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:63386600-63388600	Weak transcription	Primary T cells from cord blood	blood
20	chr11:63387200-63391000	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr11:63387600-63389000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr11:63387800-63388400	Enhancers	Primary B cells from cord blood	blood
23	chr11:63387800-63389600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:63387800-63389800	Weak transcription	Stomach Mucosa	stomach
25	chr11:63387800-63398400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr11:63388000-63390400	Weak transcription	K562	blood
27	chr11:63388000-63396000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr11:63388200-63388400	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr11:63388200-63388400	Enhancers	Ovary	ovary
30	chr11:63388200-63388400	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr11:63388200-63391400	Enhancers	Placenta	Placenta

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