Variant report

Variant	rs61928167
Chromosome Location	chr11:63414451-63414452
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63409427..63412324-chr11:63412826..63415681,2	MCF-7	breast:
2	chr11:63414204..63416229-chr11:63438443..63440690,2	MCF-7	breast:
3	chr11:63414077..63415667-chr11:63448535..63450763,2	K562	blood:
4	chr11:63413943..63415778-chr11:63418159..63420803,2	K562	blood:
5	chr11:63413938..63416131-chr11:63416938..63419102,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133318	Chromatin interaction
ENSG00000184743	Chromatin interaction

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10501394	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231535	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231543	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11551942	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11551944	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11820129	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1186941	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1211688	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274980	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158453	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17656941	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1789219	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509744	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959876	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959880	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959881	0.88[EUR][1000 genomes]
rs2959886	0.86[EUR][1000 genomes]
rs3016865	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34109368	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35345497	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35754698	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476034	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476691	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482915	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484619	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs491231	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500726	0.91[EUR][1000 genomes]
rs500991	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511819	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs515645	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517700	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518490	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518692	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs521464	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523093	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523809	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534505	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534876	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs539306	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541809	0.97[EUR][1000 genomes]
rs550629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551466	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs557882	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559405	0.94[EUR][1000 genomes]
rs560938	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs562549	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566813	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567756	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568769	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568790	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580695	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs588523	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928162	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928163	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928165	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928166	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928168	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928195	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928196	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928197	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928202	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928203	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928204	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928205	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928206	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928208	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928209	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928211	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928212	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928214	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928234	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928236	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928237	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928238	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928239	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928241	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928243	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928244	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928245	0.87[EUR][1000 genomes]
rs61928246	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928247	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928248	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61929725	0.81[EUR][1000 genomes]
rs61929728	0.81[EUR][1000 genomes]
rs61929731	0.91[EUR][1000 genomes]
rs6591821	0.89[EUR][1000 genomes]
rs6591822	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106670	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111395	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117206	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119961	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127454	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128040	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128970	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7482863	0.82[EUR][1000 genomes]
rs7928900	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931908	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932117	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939940	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943981	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944003	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944094	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945972	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949389	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949447	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv353	chr11:63411216-63428498	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63391200-63418600	Weak transcription	Psoas Muscle	Psoas
2	chr11:63393800-63426600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:63395000-63426800	Strong transcription	Dnd41	blood
4	chr11:63395600-63421000	Strong transcription	Fetal Muscle Trunk	muscle
5	chr11:63397800-63430800	Weak transcription	Fetal Brain Male	brain
6	chr11:63398800-63420200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:63398800-63421400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:63398800-63426800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:63399000-63434000	Weak transcription	Small Intestine	intestine
10	chr11:63399200-63433800	Weak transcription	Fetal Heart	heart
11	chr11:63399800-63437800	Weak transcription	Fetal Brain Female	brain
12	chr11:63400400-63437600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:63400600-63431000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:63402000-63416000	Strong transcription	Muscle Satellite Cultured Cells	--
15	chr11:63403400-63415600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:63403400-63431000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:63403800-63427200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr11:63404000-63418000	Weak transcription	Fetal Lung	lung
19	chr11:63404000-63418800	Weak transcription	Gastric	stomach
20	chr11:63404000-63424400	Weak transcription	Esophagus	oesophagus
21	chr11:63405600-63416200	Strong transcription	Osteobl	bone
22	chr11:63406800-63417600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr11:63407600-63416000	Strong transcription	HMEC	breast
24	chr11:63407600-63417200	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:63407600-63419800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr11:63407800-63414800	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr11:63407800-63415800	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr11:63407800-63415800	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:63407800-63416000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:63407800-63416000	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr11:63407800-63416600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:63407800-63419200	Strong transcription	Placenta	Placenta
33	chr11:63407800-63421600	Strong transcription	Fetal Muscle Leg	muscle
34	chr11:63407800-63423400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr11:63407800-63426800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr11:63407800-63426800	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr11:63407800-63427400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:63408200-63414800	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr11:63408200-63419400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr11:63408200-63423400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:63408400-63415600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:63408400-63415800	Strong transcription	Duodenum Mucosa	Duodenum
43	chr11:63408400-63415800	Strong transcription	NH-A	brain
44	chr11:63408400-63416400	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr11:63408400-63419600	Strong transcription	A549	lung
46	chr11:63408400-63420000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr11:63408400-63421600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr11:63408400-63426800	Strong transcription	Hela-S3	cervix
49	chr11:63408600-63414800	Strong transcription	HSMM	muscle
50	chr11:63408600-63415800	Strong transcription	Duodenum Smooth Muscle	Duodenum

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