Variant report

Variant	rs7106670
Chromosome Location	chr11:63537727-63537728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr11:63537714-63537904	GM12891	blood:	n/a	chr11:63537821-63537834 chr11:63537824-63537831
2	REST	chr11:63534517-63537808	H1-neurons	neurons:	n/a	chr11:63535702-63535712 chr11:63535771-63535781 chr11:63535790-63535803 chr11:63536356-63536366 chr11:63535815-63535828 chr11:63535778-63535791 chr11:63535775-63535788 chr11:63534588-63534606
3	POLR2A	chr11:63535608-63537728	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:63536780..63538591-chr11:63740958..63743379,2	K562	blood:
2	chr11:63529280..63533473-chr11:63536389..63539836,6	MCF-7	breast:
3	chr11:63536047..63538392-chr11:63603133..63607498,3	MCF-7	breast:
4	chr11:63533629..63535902-chr11:63537475..63539173,2	MCF-7	breast:
5	chr11:63532131..63538052-chr11:63579345..63585604,10	K562	blood:
6	chr11:63532069..63539323-chr11:63579489..63583130,14	MCF-7	breast:
7	chr11:63533773..63537846-chr11:63579275..63583196,6	MCF-7	breast:
8	chr11:63535711..63538179-chr11:63649382..63651942,2	K562	blood:
9	chr11:63536537..63538641-chr11:63540593..63542800,2	MCF-7	breast:
10	chr11:63536948..63539321-chr11:63636062..63638062,2	K562	blood:

Variant related genes	Relation type
C11orf95	TF binding region
ENSG00000255651	TF binding region
ENSG00000176340	Chromatin interaction
ENSG00000256100	Chromatin interaction
ENSG00000202089	Chromatin interaction
ENSG00000072518	Chromatin interaction
ENSG00000168005	Chromatin interaction
ENSG00000188070	Chromatin interaction

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10501394	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231535	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231543	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11551942	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11551944	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11820129	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1186941	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1211688	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274980	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158453	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17656941	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1789219	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509744	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959876	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959880	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959881	0.84[EUR][1000 genomes]
rs2959886	0.97[EUR][1000 genomes]
rs3016865	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34109368	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35345497	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35754698	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476034	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476691	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482915	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484619	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs491231	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500726	0.98[EUR][1000 genomes]
rs500991	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511819	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs515645	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517700	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518490	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518692	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs521464	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523093	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523809	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534505	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534876	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs539306	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541809	0.92[EUR][1000 genomes]
rs550629	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551466	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs557882	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559405	0.94[EUR][1000 genomes]
rs560938	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs562549	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566813	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567756	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568769	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568790	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580695	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs588523	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928162	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928163	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928165	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928166	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928167	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928168	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928195	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928196	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928197	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928202	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928203	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928204	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928205	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928206	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928208	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928209	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928211	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928212	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928214	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928234	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928237	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928238	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928241	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928243	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928244	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928245	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61928246	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928247	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928248	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61929731	0.81[EUR][1000 genomes]
rs6591821	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6591822	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111395	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117206	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119961	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127454	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128040	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128970	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928900	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931908	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932117	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939940	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943981	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944003	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944094	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945972	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949389	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949447	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	esv3322085	chr11:63534376-63538774	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv3431841	chr11:63535026-63538474	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv3426231	chr11:63535201-63537749	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63534800-63537800	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr11:63534800-63538000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:63536600-63537800	Flanking Bivalent TSS/Enh	Dnd41	blood
4	chr11:63536800-63537800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
5	chr11:63536800-63537800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:63536800-63537800	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr11:63536800-63537800	Bivalent Enhancer	Stomach Mucosa	stomach
8	chr11:63537000-63537800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr11:63537000-63537800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:63537000-63537800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
11	chr11:63537000-63537800	Flanking Active TSS	Brain Hippocampus Middle	brain
12	chr11:63537000-63537800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
13	chr11:63537000-63537800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
14	chr11:63537000-63537800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr11:63537000-63538000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
16	chr11:63537200-63537800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
17	chr11:63537200-63537800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
18	chr11:63537200-63537800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:63537200-63537800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:63537200-63537800	Flanking Active TSS	Duodenum Mucosa	Duodenum
21	chr11:63537200-63537800	Active TSS	Fetal Kidney	kidney
22	chr11:63537200-63537800	Flanking Active TSS	Stomach Smooth Muscle	stomach
23	chr11:63537200-63537800	Enhancers	Spleen	Spleen
24	chr11:63537200-63538000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:63537400-63537800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:63537400-63537800	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:63537400-63537800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
28	chr11:63537400-63537800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:63537400-63537800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
30	chr11:63537400-63537800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
31	chr11:63537400-63537800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
32	chr11:63537400-63537800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
33	chr11:63537400-63537800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr11:63537400-63537800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr11:63537400-63537800	Bivalent Enhancer	Primary B cells from cord blood	blood
36	chr11:63537400-63537800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
37	chr11:63537400-63537800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:63537400-63537800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:63537400-63537800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:63537400-63537800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:63537400-63537800	Flanking Active TSS	Brain Anterior Caudate	brain
42	chr11:63537400-63537800	Flanking Active TSS	Brain Substantia Nigra	brain
43	chr11:63537400-63537800	Flanking Active TSS	Fetal Brain Male	brain
44	chr11:63537400-63537800	Flanking Active TSS	Fetal Brain Female	brain
45	chr11:63537400-63537800	Flanking Active TSS	Left Ventricle	heart
46	chr11:63537400-63537800	Enhancers	Ovary	ovary
47	chr11:63537400-63537800	Flanking Active TSS	Rectal Smooth Muscle	rectum
48	chr11:63537400-63537800	Bivalent Enhancer	GM12878-XiMat	blood
49	chr11:63537400-63537800	Enhancers	K562	blood
50	chr11:63537400-63538000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links