Variant report

Variant	rs482915
Chromosome Location	chr11:63437396-63437397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63437372..63440690-chr11:63447067..63450757,11	K562	blood:
2	chr11:63403442..63405332-chr11:63435637..63437962,2	K562	blood:
3	chr11:63437085..63438927-chr11:63580871..63582709,2	MCF-7	breast:
4	chr11:63436138..63441406-chr11:63446930..63451361,18	MCF-7	breast:
5	chr11:63429933..63433001-chr11:63436097..63439053,5	K562	blood:
6	chr11:63436203..63440489-chr11:63447864..63452214,13	MCF-7	breast:
7	chr11:63437085..63438934-chr11:63535581..63537340,2	MCF-7	breast:
8	chr11:63437131..63441413-chr11:63464952..63468959,4	MCF-7	breast:
9	chr11:63435682..63438196-chr11:63440536..63442801,2	MCF-7	breast:
10	chr11:63436319..63439202-chr11:63579775..63581446,2	MCF-7	breast:
11	chr11:63435352..63437599-chr11:63448091..63450407,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000168005	Chromatin interaction
ENSG00000255651	Chromatin interaction
ENSG00000256789	Chromatin interaction
ENSG00000271100	Chromatin interaction
ENSG00000133318	Chromatin interaction

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10501394	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231535	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231543	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11551942	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11551944	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11820129	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1186941	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1211688	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274980	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158453	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17656941	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1789219	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509744	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959876	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959880	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959881	0.90[EUR][1000 genomes]
rs2959886	0.88[EUR][1000 genomes]
rs3016865	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34109368	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35345497	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35754698	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476034	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476691	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484619	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs491231	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500726	0.93[EUR][1000 genomes]
rs500991	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511819	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs515645	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517700	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518490	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518692	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs521464	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523093	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523809	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534505	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534876	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs539306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541809	0.99[EUR][1000 genomes]
rs550629	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551466	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs557882	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559405	0.97[EUR][1000 genomes]
rs560938	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs562549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566813	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567756	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568769	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568790	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580695	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs588523	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928162	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928163	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928165	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928166	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928167	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928168	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928195	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928196	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928197	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928202	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928203	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928204	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928205	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928206	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928208	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928209	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928211	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928212	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928214	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928234	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928236	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928237	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928238	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928239	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928241	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928243	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928244	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928245	0.89[EUR][1000 genomes]
rs61928246	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928247	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928248	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61929725	0.81[EUR][1000 genomes]
rs61929731	0.89[EUR][1000 genomes]
rs6591821	0.91[EUR][1000 genomes]
rs6591822	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106670	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111395	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117206	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119961	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127454	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128040	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128970	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928900	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931908	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932117	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939940	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943981	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944003	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944094	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945972	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949389	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949447	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63399800-63437800	Weak transcription	Fetal Brain Female	brain
2	chr11:63400400-63437600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:63411000-63437800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:63414600-63437400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:63418600-63437600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:63418600-63437600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:63420400-63437600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:63420600-63437400	Weak transcription	Brain Germinal Matrix	brain
9	chr11:63423400-63438000	Weak transcription	Fetal Thymus	thymus
10	chr11:63425200-63437600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:63425600-63437800	Weak transcription	Fetal Intestine Small	intestine
12	chr11:63426200-63437600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:63426200-63437600	Weak transcription	Fetal Kidney	kidney
14	chr11:63429200-63437600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr11:63429400-63437400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:63430000-63437400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:63430000-63437400	Enhancers	Psoas Muscle	Psoas
18	chr11:63431600-63437400	Weak transcription	Aorta	Aorta
19	chr11:63431600-63437400	Weak transcription	Brain Substantia Nigra	brain
20	chr11:63431800-63437400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:63432000-63437400	Weak transcription	Brain Hippocampus Middle	brain
22	chr11:63432000-63438200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:63433200-63438200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:63434000-63437400	Enhancers	Colon Smooth Muscle	Colon
25	chr11:63434000-63438000	Enhancers	Small Intestine	intestine
26	chr11:63434600-63437600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr11:63434600-63437800	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr11:63434600-63437800	Enhancers	Left Ventricle	heart
29	chr11:63434600-63438000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr11:63434800-63437400	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr11:63434800-63437600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:63434800-63438000	Enhancers	Primary T cells fromperipheralblood	blood
33	chr11:63434800-63438000	Flanking Active TSS	Hela-S3	cervix
34	chr11:63435000-63437400	Weak transcription	Brain Anterior Caudate	brain
35	chr11:63435000-63437400	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr11:63435000-63437800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:63435200-63437400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:63435200-63437600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
39	chr11:63435400-63437400	Weak transcription	Lung	lung
40	chr11:63435400-63437400	Enhancers	K562	blood
41	chr11:63435400-63437600	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr11:63435400-63437600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:63435400-63437800	Enhancers	Colonic Mucosa	Colon
44	chr11:63435600-63438200	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr11:63435800-63437400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr11:63435800-63437400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:63435800-63437400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr11:63435800-63437400	Enhancers	Stomach Smooth Muscle	stomach
49	chr11:63435800-63437600	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr11:63435800-63437600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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