Variant report

Variant	rs61928236
Chromosome Location	chr11:63533965-63533966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr11:63533927-63534234	HepG2	liver:	n/a	n/a
2	MAZ	chr11:63533898-63537592	IMR90	lung:	n/a	chr11:63535779-63535789 chr11:63535837-63535847
3	EP300	chr11:63533944-63534320	HepG2	liver:	n/a	chr11:63534115-63534131
4	POLR2A	chr11:63533831-63534083	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63448182..63450282-chr11:63533461..63536298,4	MCF-7	breast:
2	chr11:63533005..63535080-chr11:63601950..63603947,2	MCF-7	breast:
3	chr11:63532131..63538052-chr11:63579345..63585604,10	K562	blood:
4	chr11:63532069..63539323-chr11:63579489..63583130,14	MCF-7	breast:
5	chr11:63533773..63537846-chr11:63579275..63583196,6	MCF-7	breast:
6	chr11:63531277..63535286-chr11:63705300..63707994,3	MCF-7	breast:
7	chr11:63532131..63535124-chr11:63579146..63582872,4	K562	blood:
8	chr11:63437417..63439651-chr11:63532413..63534182,2	MCF-7	breast:
9	chr1:89566099..89566939-chr11:63533954..63534897,2	MCF-7	breast:

No data

Variant related genes	Relation type
C11orf95	TF binding region
ENSG00000168005	Chromatin interaction
ENSG00000110583	Chromatin interaction
ENSG00000256280	Chromatin interaction
ENSG00000184743	Chromatin interaction
ENSG00000133318	Chromatin interaction

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10501394	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231535	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231543	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11551942	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11551944	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11820129	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1186941	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1211688	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274980	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158453	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17656941	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1789219	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509744	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959876	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959880	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959881	0.84[EUR][1000 genomes]
rs2959886	0.97[EUR][1000 genomes]
rs3016865	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34109368	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35345497	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35754698	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476034	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476691	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482915	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484619	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs491231	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500726	0.98[EUR][1000 genomes]
rs500991	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511819	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs515645	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517700	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518490	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518692	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs521464	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523093	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523809	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534505	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534876	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs539306	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541809	0.92[EUR][1000 genomes]
rs550629	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551466	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs557882	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559405	0.94[EUR][1000 genomes]
rs560938	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs562549	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566813	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567756	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568769	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568790	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580695	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs588523	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928162	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928163	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928165	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928166	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928167	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928168	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928195	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928196	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928197	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928202	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928203	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928204	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928205	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928206	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928208	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928209	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928211	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928212	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928214	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928234	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928238	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928239	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928241	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928243	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928244	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928245	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61928246	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928247	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928248	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61929731	0.81[EUR][1000 genomes]
rs6591821	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6591822	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111395	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117206	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119961	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127454	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128040	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128970	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928900	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931908	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932117	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939940	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943981	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944003	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944094	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945972	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949389	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949447	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	esv1821734	chr11:63533300-63537509	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63509000-63534800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr11:63511000-63534800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr11:63516000-63534800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:63516400-63534200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:63519400-63534800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr11:63521200-63534600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr11:63521400-63534400	Weak transcription	Primary B cells from cord blood	blood
8	chr11:63521400-63534800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:63525000-63534400	Weak transcription	HSMMtube	muscle
10	chr11:63525800-63534600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr11:63526200-63534600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr11:63526600-63534800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr11:63526600-63534800	Weak transcription	Small Intestine	intestine
14	chr11:63528000-63534200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:63528000-63534200	Weak transcription	Fetal Kidney	kidney
16	chr11:63528400-63534000	Weak transcription	HSMM	muscle
17	chr11:63528400-63534600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr11:63528800-63534400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr11:63529200-63534400	Enhancers	Fetal Brain Male	brain
20	chr11:63529200-63534400	Weak transcription	K562	blood
21	chr11:63529200-63534600	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr11:63529200-63534800	Weak transcription	Primary T cells from cord blood	blood
23	chr11:63529200-63534800	Enhancers	Fetal Heart	heart
24	chr11:63529400-63534400	Weak transcription	Osteobl	bone
25	chr11:63529400-63534800	Enhancers	Fetal Lung	lung
26	chr11:63529600-63534000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:63529600-63534400	Weak transcription	NHDF-Ad	bronchial
28	chr11:63531000-63534200	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr11:63531200-63534000	Weak transcription	HUVEC	blood vessel
30	chr11:63531200-63534400	Weak transcription	Brain Angular Gyrus	brain
31	chr11:63531200-63534400	Weak transcription	NHEK	skin
32	chr11:63531200-63534800	Weak transcription	Brain Substantia Nigra	brain
33	chr11:63531200-63534800	Weak transcription	Esophagus	oesophagus
34	chr11:63531200-63534800	Weak transcription	Left Ventricle	heart
35	chr11:63531400-63534000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:63531400-63534800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr11:63531400-63535000	Enhancers	Placenta Amnion	Placenta Amnion
38	chr11:63531600-63534000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr11:63531600-63534000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:63531600-63534000	Weak transcription	Right Atrium	heart
41	chr11:63531600-63534200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr11:63531800-63534000	Flanking Active TSS	Liver	Liver
43	chr11:63531800-63534000	Genic enhancers	Fetal Muscle Leg	muscle
44	chr11:63531800-63534400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:63532000-63534000	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr11:63532000-63534000	Transcr. at gene 5' and 3'	Brain Germinal Matrix	brain
47	chr11:63532000-63534200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:63532200-63534000	Enhancers	Ovary	ovary
49	chr11:63532200-63534400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr11:63532200-63534600	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links