Variant report

Variant	rs61928234
Chromosome Location	chr11:63516916-63516917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63515783..63518081-chr11:63529282..63531993,2	K562	blood:
2	chr11:63516356..63519333-chr11:63535797..63537370,2	K562	blood:

Variant related genes	Relation type
ENSG00000255651	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10501394	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231535	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231543	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11551942	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11551944	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11820129	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1186941	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1211688	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274980	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158453	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17656941	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1789219	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509744	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959876	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959880	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959881	0.84[EUR][1000 genomes]
rs2959886	0.97[EUR][1000 genomes]
rs3016865	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34109368	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35345497	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35754698	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476034	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476691	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482915	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484619	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs491231	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500726	0.98[EUR][1000 genomes]
rs500991	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511819	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs515645	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517700	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518490	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518692	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs521464	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523093	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523809	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534505	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534876	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs539306	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541809	0.92[EUR][1000 genomes]
rs550629	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551466	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs557882	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559405	0.94[EUR][1000 genomes]
rs560938	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs562549	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566813	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567756	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568769	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568790	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580695	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs588523	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928162	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928163	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928165	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928166	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928167	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928168	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928195	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928196	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928197	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928202	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928203	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928204	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928205	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928206	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928208	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928209	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928211	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928212	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928214	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928236	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928237	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928238	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928239	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928241	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928243	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928244	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928245	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61928246	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928247	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928248	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61929731	0.81[EUR][1000 genomes]
rs6591821	0.95[EUR][1000 genomes]
rs6591822	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106670	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111395	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117206	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119961	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127454	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128040	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128970	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928900	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931908	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932117	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939940	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943981	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944003	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944094	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945972	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949389	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949447	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63450800-63517400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr11:63467600-63517600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr11:63473000-63518000	Weak transcription	Aorta	Aorta
4	chr11:63473000-63529400	Weak transcription	Right Ventricle	heart
5	chr11:63478800-63517200	Weak transcription	Fetal Intestine Small	intestine
6	chr11:63481000-63517600	Weak transcription	Spleen	Spleen
7	chr11:63483400-63517000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:63486200-63519200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:63487400-63517000	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:63487400-63517600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:63488000-63519800	Weak transcription	NH-A	brain
12	chr11:63491000-63529600	Weak transcription	Pancreas	Pancrea
13	chr11:63492800-63528000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:63499000-63518600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr11:63501800-63518400	Weak transcription	Fetal Brain Female	brain
16	chr11:63501800-63530000	Weak transcription	Psoas Muscle	Psoas
17	chr11:63505600-63517200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:63506200-63517200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:63506200-63517600	Weak transcription	Colon Smooth Muscle	Colon
20	chr11:63506200-63527600	Weak transcription	Fetal Brain Male	brain
21	chr11:63506400-63517200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr11:63506400-63517400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr11:63506400-63517400	Weak transcription	Fetal Kidney	kidney
24	chr11:63506400-63517400	Weak transcription	Osteobl	bone
25	chr11:63506400-63517600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:63506400-63518400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:63506400-63518600	Weak transcription	Hela-S3	cervix
28	chr11:63506400-63518600	Weak transcription	HSMM	muscle
29	chr11:63507000-63518000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr11:63509000-63534800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr11:63511000-63534800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr11:63511200-63529800	Weak transcription	Stomach Mucosa	stomach
33	chr11:63512000-63524800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr11:63513400-63517600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:63513400-63518200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr11:63513600-63517000	Weak transcription	HepG2	liver
37	chr11:63513600-63517200	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr11:63513600-63517200	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr11:63513600-63517400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:63513600-63517600	Weak transcription	Duodenum Mucosa	Duodenum
41	chr11:63513600-63518000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr11:63513600-63528400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr11:63513800-63529200	Weak transcription	Fetal Heart	heart
44	chr11:63514000-63517000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr11:63514000-63517200	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr11:63514000-63519000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr11:63514000-63519800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr11:63514200-63517000	Weak transcription	HSMMtube	muscle
49	chr11:63514200-63518400	Weak transcription	HUVEC	blood vessel
50	chr11:63514200-63518600	Weak transcription	Primary B cells from cord blood	blood

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