Variant report
Variant | rs3017733 |
---|---|
Chromosome Location | chr11:63554910-63554911 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr11:63322621..63325440-chr11:63554717..63556555,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11820129 | 0.83[EUR][1000 genomes] |
rs1789219 | 0.83[EUR][1000 genomes] |
rs34109368 | 0.83[EUR][1000 genomes] |
rs35754698 | 0.81[EUR][1000 genomes] |
rs476034 | 0.81[EUR][1000 genomes] |
rs484619 | 0.81[EUR][1000 genomes] |
rs523093 | 0.83[EUR][1000 genomes] |
rs523809 | 0.83[EUR][1000 genomes] |
rs557882 | 0.83[EUR][1000 genomes] |
rs560938 | 0.83[EUR][1000 genomes] |
rs566813 | 0.82[EUR][1000 genomes] |
rs61928238 | 0.81[EUR][1000 genomes] |
rs61928239 | 0.81[EUR][1000 genomes] |
rs61928241 | 0.83[EUR][1000 genomes] |
rs61928243 | 0.83[EUR][1000 genomes] |
rs61928244 | 0.83[EUR][1000 genomes] |
rs61928245 | 0.81[EUR][1000 genomes] |
rs61928246 | 0.83[EUR][1000 genomes] |
rs61928247 | 0.83[EUR][1000 genomes] |
rs61928248 | 0.82[EUR][1000 genomes] |
rs6591821 | 0.83[EUR][1000 genomes] |
rs6591822 | 0.83[EUR][1000 genomes] |
rs7111395 | 0.83[EUR][1000 genomes] |
rs7128040 | 0.81[EUR][1000 genomes] |
rs72932287 | 0.97[ASN][1000 genomes] |
rs72932293 | 0.93[ASN][1000 genomes] |
rs7943981 | 0.83[EUR][1000 genomes] |
rs7944003 | 0.83[EUR][1000 genomes] |
rs7944094 | 0.83[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1051171 | chr11:62987064-63835715 | Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 100 gene(s) | inside rSNPs | diseases |
2 | nsv832183 | chr11:63416678-63564565 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
3 | nsv468589 | chr11:63515752-63713239 | Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
4 | nsv555180 | chr11:63515752-63713239 | Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
5 | esv3413647 | chr11:63550425-63582789 | Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:63552000-63555600 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
2 | chr11:63552000-63556400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
3 | chr11:63553200-63557600 | Weak transcription | Primary Natural Killer cells fromperipheralblood | blood |