Variant report

Variant	rs11231545
Chromosome Location	chr11:63413028-63413029
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63409427..63412324-chr11:63412826..63415681,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10501394	1.00[CEU][hapmap]
rs10897442	0.83[YRI][hapmap]
rs11551942	1.00[CEU][hapmap]
rs11551944	0.91[CEU][hapmap]
rs1186605	0.87[YRI][hapmap]
rs1186941	1.00[CEU][hapmap]
rs12274980	1.00[CEU][hapmap]
rs17158453	1.00[CEU][hapmap]
rs17656941	1.00[CEU][hapmap]
rs2509744	1.00[CEU][hapmap]
rs2959880	1.00[CEU][hapmap]
rs3016865	1.00[CEU][hapmap]
rs476034	1.00[CEU][hapmap]
rs476691	1.00[CEU][hapmap]
rs500991	1.00[CEU][hapmap]
rs511819	1.00[CEU][hapmap]
rs517700	1.00[CEU][hapmap]
rs518490	1.00[CEU][hapmap]
rs521464	1.00[CEU][hapmap]
rs523093	1.00[CEU][hapmap]
rs542998	0.82[YRI][hapmap]
rs551466	1.00[CEU][hapmap]
rs566255	0.86[YRI][hapmap]
rs567756	1.00[CEU][hapmap]
rs568790	1.00[CEU][hapmap]
rs580695	1.00[CEU][hapmap]
rs7111395	1.00[CEU][hapmap]
rs7127454	1.00[CEU][hapmap]
rs7128970	1.00[CEU][hapmap]
rs7928900	1.00[CEU][hapmap]
rs7943981	1.00[CEU][hapmap]
rs7945972	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv353	chr11:63411216-63428498	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63388800-63414200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:63390800-63414200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:63391200-63418600	Weak transcription	Psoas Muscle	Psoas
4	chr11:63393800-63426600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:63395000-63426800	Strong transcription	Dnd41	blood
6	chr11:63395600-63421000	Strong transcription	Fetal Muscle Trunk	muscle
7	chr11:63397800-63430800	Weak transcription	Fetal Brain Male	brain
8	chr11:63398800-63420200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:63398800-63421400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:63398800-63426800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:63399000-63434000	Weak transcription	Small Intestine	intestine
12	chr11:63399200-63433800	Weak transcription	Fetal Heart	heart
13	chr11:63399800-63437800	Weak transcription	Fetal Brain Female	brain
14	chr11:63400400-63437600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:63400600-63431000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:63402000-63416000	Strong transcription	Muscle Satellite Cultured Cells	--
17	chr11:63403400-63415600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:63403400-63431000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr11:63403800-63427200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr11:63404000-63418000	Weak transcription	Fetal Lung	lung
21	chr11:63404000-63418800	Weak transcription	Gastric	stomach
22	chr11:63404000-63424400	Weak transcription	Esophagus	oesophagus
23	chr11:63405600-63416200	Strong transcription	Osteobl	bone
24	chr11:63406800-63417600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr11:63407600-63414400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:63407600-63416000	Strong transcription	HMEC	breast
27	chr11:63407600-63417200	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr11:63407600-63419800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr11:63407800-63414000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:63407800-63414800	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr11:63407800-63415800	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr11:63407800-63415800	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr11:63407800-63416000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:63407800-63416000	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr11:63407800-63416600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:63407800-63419200	Strong transcription	Placenta	Placenta
37	chr11:63407800-63421600	Strong transcription	Fetal Muscle Leg	muscle
38	chr11:63407800-63423400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:63407800-63426800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr11:63407800-63426800	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr11:63407800-63427400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:63408200-63414800	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr11:63408200-63419400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:63408200-63423400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:63408400-63413800	Strong transcription	Placenta Amnion	Placenta Amnion
46	chr11:63408400-63414000	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr11:63408400-63414000	Strong transcription	Primary B cells from cord blood	blood
48	chr11:63408400-63415600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:63408400-63415800	Strong transcription	Duodenum Mucosa	Duodenum
50	chr11:63408400-63415800	Strong transcription	NH-A	brain

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