Variant report

Variant	rs1186605
Chromosome Location	chr11:63497012-63497013
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63492098..63496523-chr11:63496875..63500092,3	K562	blood:
2	chr11:63433799..63435769-chr11:63495948..63497902,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10897442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231545	0.87[YRI][hapmap]
rs1404500	1.00[JPT][hapmap]
rs17615385	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1789218	0.93[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959872	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758647	1.00[CHB][hapmap]
rs41509648	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs474548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs520908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs522648	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs542966	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs542998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs545539	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580083	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928249	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928251	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113325	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121664	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122132	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv897628	chr11:63456478-63508334	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63450800-63517400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr11:63459600-63516600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:63463200-63516200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:63467400-63497200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:63467600-63516000	Weak transcription	Thymus	Thymus
6	chr11:63467600-63517600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:63469400-63497600	Weak transcription	Left Ventricle	heart
8	chr11:63473000-63516000	Weak transcription	Lung	lung
9	chr11:63473000-63518000	Weak transcription	Aorta	Aorta
10	chr11:63473000-63529400	Weak transcription	Right Ventricle	heart
11	chr11:63474800-63501200	Weak transcription	Fetal Stomach	stomach
12	chr11:63477400-63498000	Weak transcription	NHLF	lung
13	chr11:63478800-63517200	Weak transcription	Fetal Intestine Small	intestine
14	chr11:63480600-63509000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:63481000-63501000	Weak transcription	Fetal Brain Female	brain
16	chr11:63481000-63517600	Weak transcription	Spleen	Spleen
17	chr11:63481600-63505800	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:63481800-63512800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:63482400-63505000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:63483400-63517000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:63484000-63504600	Weak transcription	A549	lung
22	chr11:63486200-63519200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:63487000-63505200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:63487000-63506200	Weak transcription	NHEK	skin
25	chr11:63487000-63516800	Weak transcription	Primary T cells from cord blood	blood
26	chr11:63487400-63501000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:63487400-63505200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:63487400-63505200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:63487400-63506200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr11:63487400-63516000	Weak transcription	Fetal Thymus	thymus
31	chr11:63487400-63516600	Weak transcription	Dnd41	blood
32	chr11:63487400-63517000	Weak transcription	Fetal Muscle Leg	muscle
33	chr11:63487400-63517600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:63487600-63501000	Weak transcription	Psoas Muscle	Psoas
35	chr11:63487600-63505200	Weak transcription	NHDF-Ad	bronchial
36	chr11:63487600-63513400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:63487800-63516600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:63488000-63505000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:63488000-63505400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr11:63488000-63516600	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr11:63488000-63519800	Weak transcription	NH-A	brain
42	chr11:63488200-63505000	Weak transcription	Brain Hippocampus Middle	brain
43	chr11:63488200-63505200	Weak transcription	Brain Angular Gyrus	brain
44	chr11:63488400-63516400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:63488400-63516400	Weak transcription	Brain Germinal Matrix	brain
46	chr11:63488600-63501600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr11:63488600-63503200	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr11:63488600-63512400	Weak transcription	Adipose Nuclei	Adipose
49	chr11:63490600-63504800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:63490600-63505400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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