Variant report

Variant	rs1404500
Chromosome Location	chr11:63395617-63395618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:63394760-63395904	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:63389927..63391632-chr11:63394971..63396472,2	K562	blood:
2	chr11:63274267..63276737-chr11:63394190..63395861,2	K562	blood:
3	chr11:63326180..63328282-chr11:63394153..63397147,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270269	TF binding region
ENSG00000133317	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10897442	1.00[JPT][hapmap]
rs1186605	1.00[JPT][hapmap]
rs17615385	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41509648	1.00[JPT][hapmap];0.89[TSI][hapmap]
rs474548	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs520908	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.95[EUR][1000 genomes]
rs542966	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs542998	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs566255	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7118001	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7122132	1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63382000-63398400	Weak transcription	Small Intestine	intestine
2	chr11:63382200-63396400	Weak transcription	Spleen	Spleen
3	chr11:63382400-63396400	Weak transcription	Left Ventricle	heart
4	chr11:63382400-63398400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:63382400-63409800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:63387800-63398400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:63388000-63396000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:63388600-63396400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:63388800-63396200	Weak transcription	Primary T cells from cord blood	blood
10	chr11:63388800-63406400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:63388800-63414200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:63389000-63396400	Weak transcription	Primary B cells from cord blood	blood
13	chr11:63389000-63396600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr11:63389000-63398000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr11:63389200-63396000	Weak transcription	Thymus	Thymus
16	chr11:63390000-63396200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:63390000-63396200	Weak transcription	GM12878-XiMat	blood
18	chr11:63390000-63396400	Weak transcription	Brain Angular Gyrus	brain
19	chr11:63390000-63396400	Weak transcription	Brain Anterior Caudate	brain
20	chr11:63390200-63396400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:63390400-63398400	Weak transcription	Fetal Kidney	kidney
22	chr11:63390600-63396600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:63390600-63409600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr11:63390800-63414200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr11:63391000-63396200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr11:63391000-63396200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:63391000-63396600	Weak transcription	Gastric	stomach
28	chr11:63391200-63410400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr11:63391200-63418600	Weak transcription	Psoas Muscle	Psoas
30	chr11:63391400-63396000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:63391400-63396000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:63391400-63396200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr11:63391400-63396200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr11:63391400-63396400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr11:63391400-63396400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr11:63391400-63396400	Weak transcription	Pancreas	Pancrea
37	chr11:63391400-63396600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:63391400-63398400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr11:63391400-63398400	Weak transcription	Stomach Mucosa	stomach
40	chr11:63391600-63396200	Weak transcription	Ovary	ovary
41	chr11:63391600-63396400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr11:63391600-63396400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr11:63391800-63395800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr11:63392800-63396400	Weak transcription	NHLF	lung
45	chr11:63393000-63396000	Weak transcription	Right Ventricle	heart
46	chr11:63393000-63396200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:63393000-63396400	Weak transcription	Fetal Lung	lung
48	chr11:63393400-63396000	Weak transcription	Fetal Stomach	stomach
49	chr11:63393400-63396400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr11:63393600-63396400	Weak transcription	Brain Germinal Matrix	brain

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