Variant report

Variant	rs17615385
Chromosome Location	chr11:63488573-63488574
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63487925..63490016-chr11:63510540..63512690,2	K562	blood:
2	chr11:63437687..63440322-chr11:63486788..63490185,4	K562	blood:
3	chr11:63486022..63488708-chr11:63493925..63495605,2	K562	blood:

Variant related genes	Relation type
ENSG00000184743	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10897442	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11551215	0.90[EUR][1000 genomes]
rs1186605	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1404500	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1789218	1.00[CHB][hapmap]
rs3758647	1.00[CHB][hapmap]
rs41509648	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs474548	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs520908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs542966	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs542998	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs566255	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs58508927	1.00[ASN][1000 genomes]
rs7113534	0.85[EUR][1000 genomes]
rs7118001	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122132	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv897628	chr11:63456478-63508334	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63450800-63517400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr11:63456800-63490000	Weak transcription	Primary B cells from cord blood	blood
3	chr11:63459600-63516600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:63463200-63516200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:63464200-63489600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr11:63466200-63490000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:63467400-63497200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:63467600-63489200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:63467600-63489800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:63467600-63516000	Weak transcription	Thymus	Thymus
11	chr11:63467600-63517600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr11:63469400-63497600	Weak transcription	Left Ventricle	heart
13	chr11:63473000-63488800	Weak transcription	Esophagus	oesophagus
14	chr11:63473000-63516000	Weak transcription	Lung	lung
15	chr11:63473000-63518000	Weak transcription	Aorta	Aorta
16	chr11:63473000-63529400	Weak transcription	Right Ventricle	heart
17	chr11:63474800-63501200	Weak transcription	Fetal Stomach	stomach
18	chr11:63477400-63498000	Weak transcription	NHLF	lung
19	chr11:63478400-63488600	Weak transcription	HSMMtube	muscle
20	chr11:63478400-63492400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:63478400-63493600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:63478400-63496000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:63478400-63496400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:63478600-63490200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:63478800-63495200	Weak transcription	Fetal Intestine Large	intestine
26	chr11:63478800-63517200	Weak transcription	Fetal Intestine Small	intestine
27	chr11:63479600-63488600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr11:63479600-63493000	Weak transcription	Placenta	Placenta
29	chr11:63480600-63509000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr11:63481000-63501000	Weak transcription	Fetal Brain Female	brain
31	chr11:63481000-63517600	Weak transcription	Spleen	Spleen
32	chr11:63481600-63505800	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:63481800-63512800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr11:63482400-63505000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:63483400-63489600	Weak transcription	HMEC	breast
36	chr11:63483400-63517000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:63483600-63494000	Weak transcription	HepG2	liver
38	chr11:63484000-63488600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:63484000-63504600	Weak transcription	A549	lung
40	chr11:63484400-63490200	Weak transcription	Fetal Brain Male	brain
41	chr11:63484600-63494000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:63485000-63491200	Weak transcription	Duodenum Mucosa	Duodenum
43	chr11:63485600-63488600	Strong transcription	HSMM	muscle
44	chr11:63486200-63488600	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr11:63486200-63519200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:63486400-63488600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr11:63486800-63488600	Enhancers	Brain Substantia Nigra	brain
48	chr11:63486800-63490400	Weak transcription	Hela-S3	cervix
49	chr11:63487000-63489000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr11:63487000-63491000	Weak transcription	H9 Cell Line	embryonic stem cell

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