Variant report

Variant	rs1789218
Chromosome Location	chr11:63549224-63549225
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63536028..63538854-chr11:63547025..63549326,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255651	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10897442	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1186605	0.93[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17615385	1.00[CHB][hapmap]
rs1789219	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2509744	0.93[YRI][hapmap]
rs2959872	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758647	1.00[CHB][hapmap]
rs41509648	1.00[CHB][hapmap]
rs474548	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476034	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs484619	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs515645	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs520908	1.00[CHB][hapmap]
rs522648	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs542966	1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs542998	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs545539	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs557882	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs566255	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566813	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs580083	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs588523	0.81[AMR][1000 genomes]
rs61928249	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928251	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113325	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121664	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122132	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63539400-63551400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:63545400-63551200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:63546800-63551600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:63547000-63551600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:63547000-63551800	Weak transcription	Fetal Stomach	stomach
6	chr11:63547200-63551600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:63547400-63551400	Weak transcription	Placenta	Placenta
8	chr11:63547600-63550200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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