Variant report

Variant	rs7122132
Chromosome Location	chr11:63572937-63572938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63572088..63574905-chr11:63580493..63583512,3	MCF-7	breast:
2	chr11:63571565..63574234-chr11:63577840..63579513,2	K562	blood:
3	chr11:63571560..63574366-chr11:63579771..63584312,4	K562	blood:
4	chr11:63571872..63573739-chr11:63580573..63582392,2	K562	blood:
5	chr11:63569529..63574543-chr11:63580305..63583483,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168005	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10897442	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11231674	1.00[CHB][hapmap]
rs11551215	0.89[EUR][1000 genomes]
rs1186605	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12291587	1.00[EUR][1000 genomes]
rs12361815	1.00[CHB][hapmap]
rs1404500	1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]
rs17615385	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1789218	1.00[CHB][hapmap]
rs2508191	1.00[CHB][hapmap]
rs3758647	1.00[CHB][hapmap]
rs41509648	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs474548	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs520908	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs542966	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs542998	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs547526	1.00[ASN][1000 genomes]
rs554164	1.00[ASN][1000 genomes]
rs56333192	1.00[AFR][1000 genomes]
rs566255	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs58017969	0.89[AFR][1000 genomes]
rs58508927	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs59006502	1.00[AFR][1000 genomes]
rs687631	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv3413647	chr11:63550425-63582789	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63565000-63573800	Weak transcription	Right Atrium	heart
2	chr11:63567600-63580000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:63569600-63575800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:63569800-63575000	Enhancers	Placenta	Placenta
5	chr11:63570200-63576800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:63570600-63578600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:63570600-63579200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:63570600-63580000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:63570800-63578800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:63571000-63573800	Weak transcription	Lung	lung
11	chr11:63571000-63578800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:63571000-63578800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:63571000-63580000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:63571000-63580000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:63571000-63580000	Weak transcription	A549	lung
16	chr11:63571200-63575000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:63571200-63578600	Weak transcription	K562	blood
18	chr11:63571200-63578800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:63571800-63580000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:63572000-63578800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:63572000-63580000	Weak transcription	Osteobl	bone
22	chr11:63572200-63580000	Weak transcription	HMEC	breast
23	chr11:63572400-63580000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr11:63572600-63580000	Weak transcription	Fetal Intestine Small	intestine
25	chr11:63572600-63580200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:63572800-63573600	Weak transcription	Ovary	ovary
27	chr11:63572800-63573600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr11:63572800-63573600	Weak transcription	Hela-S3	cervix
29	chr11:63572800-63580000	Weak transcription	Colonic Mucosa	Colon

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