Variant report

Variant	rs3758647
Chromosome Location	chr11:63419776-63419777
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63413943..63415778-chr11:63418159..63420803,2	K562	blood:
2	chr11:63417205..63419913-chr11:63437420..63439431,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184743	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10897442	1.00[CHB][hapmap]
rs1186605	1.00[CHB][hapmap]
rs17615385	1.00[CHB][hapmap]
rs1789218	1.00[CHB][hapmap]
rs41509648	1.00[CHB][hapmap]
rs474548	1.00[CHB][hapmap]
rs520908	1.00[CHB][hapmap]
rs542966	1.00[CHB][hapmap]
rs542998	1.00[CHB][hapmap]
rs566255	1.00[CHB][hapmap]
rs7122132	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv353	chr11:63411216-63428498	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63393800-63426600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr11:63395000-63426800	Strong transcription	Dnd41	blood
3	chr11:63395600-63421000	Strong transcription	Fetal Muscle Trunk	muscle
4	chr11:63397800-63430800	Weak transcription	Fetal Brain Male	brain
5	chr11:63398800-63420200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:63398800-63421400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:63398800-63426800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:63399000-63434000	Weak transcription	Small Intestine	intestine
9	chr11:63399200-63433800	Weak transcription	Fetal Heart	heart
10	chr11:63399800-63437800	Weak transcription	Fetal Brain Female	brain
11	chr11:63400400-63437600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:63400600-63431000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:63403400-63431000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:63403800-63427200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:63404000-63424400	Weak transcription	Esophagus	oesophagus
16	chr11:63407600-63419800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr11:63407800-63421600	Strong transcription	Fetal Muscle Leg	muscle
18	chr11:63407800-63423400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:63407800-63426800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:63407800-63426800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr11:63407800-63427400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:63408200-63423400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:63408400-63420000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr11:63408400-63421600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:63408400-63426800	Strong transcription	Hela-S3	cervix
26	chr11:63408800-63421200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr11:63409600-63425600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:63409800-63423600	Strong transcription	Liver	Liver
29	chr11:63410200-63425600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:63410800-63435000	Weak transcription	Stomach Mucosa	stomach
31	chr11:63411000-63435200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr11:63411000-63437800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr11:63411200-63420000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr11:63411200-63424800	Weak transcription	Fetal Kidney	kidney
35	chr11:63411200-63437000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:63411400-63424400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr11:63411800-63420200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr11:63411800-63430200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr11:63414400-63422600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:63414400-63422600	Weak transcription	Fetal Thymus	thymus
41	chr11:63414600-63424400	Weak transcription	Brain Hippocampus Middle	brain
42	chr11:63414600-63424800	Weak transcription	Aorta	Aorta
43	chr11:63414600-63435600	Weak transcription	Thymus	Thymus
44	chr11:63414600-63437400	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr11:63414800-63426200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:63415200-63420400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:63415600-63423600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr11:63415800-63424200	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr11:63416000-63419800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr11:63416000-63427800	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links