Variant report

Variant	rs34579721
Chromosome Location	chr3:159507859-159507860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159480418..159485166-chr3:159503972..159508876,8	MCF-7	breast:
2	chr3:159506660..159510516-chr3:159511737..159514255,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250588	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11925884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13064756	0.92[ASN][1000 genomes]
rs13081837	0.81[AFR][1000 genomes]
rs13098814	0.92[ASN][1000 genomes]
rs28362492	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34518526	0.92[ASN][1000 genomes]
rs35176855	0.89[ASN][1000 genomes]
rs57003177	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs67536213	0.88[ASN][1000 genomes]
rs924247	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4084	chr3:159492488-159513251	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159493600-159509200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:159493600-159516200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:159500400-159509200	Enhancers	HepG2	liver
4	chr3:159501000-159508000	Enhancers	Colon Smooth Muscle	Colon
5	chr3:159501800-159510200	Enhancers	Fetal Intestine Large	intestine
6	chr3:159502000-159522800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:159502200-159509000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:159502400-159508000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:159502400-159508600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:159502800-159508000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:159503000-159510200	Enhancers	Fetal Intestine Small	intestine
12	chr3:159503400-159508000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:159503600-159508000	Enhancers	Duodenum Mucosa	Duodenum
14	chr3:159503800-159509600	Enhancers	Adipose Nuclei	Adipose
15	chr3:159504000-159518600	Enhancers	Brain Hippocampus Middle	brain
16	chr3:159504200-159518400	Enhancers	Brain Substantia Nigra	brain
17	chr3:159504400-159508000	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr3:159504400-159508200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr3:159504400-159508200	Enhancers	Brain Cingulate Gyrus	brain
20	chr3:159504400-159509000	Enhancers	Liver	Liver
21	chr3:159504600-159509400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:159504600-159511200	Enhancers	Brain Anterior Caudate	brain
23	chr3:159504800-159508800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:159505000-159515000	Enhancers	Brain Angular Gyrus	brain
25	chr3:159505400-159508200	Weak transcription	Colonic Mucosa	Colon
26	chr3:159505600-159512600	Enhancers	Rectal Smooth Muscle	rectum
27	chr3:159505600-159515600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr3:159505800-159508600	Weak transcription	Gastric	stomach
29	chr3:159505800-159508800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr3:159506000-159508800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr3:159506000-159508800	Weak transcription	Right Ventricle	heart
32	chr3:159506000-159509200	Weak transcription	Lung	lung
33	chr3:159506000-159518200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr3:159506200-159509000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr3:159506200-159509000	Weak transcription	NHDF-Ad	bronchial
36	chr3:159506200-159510000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr3:159506200-159522600	Weak transcription	Fetal Kidney	kidney
38	chr3:159506400-159508200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr3:159506400-159508800	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr3:159506400-159509000	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr3:159506400-159509000	Enhancers	Stomach Smooth Muscle	stomach
42	chr3:159506400-159509200	Weak transcription	Esophagus	oesophagus
43	chr3:159506400-159509200	Weak transcription	Left Ventricle	heart
44	chr3:159506400-159509200	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr3:159506400-159509400	Weak transcription	Osteobl	bone
46	chr3:159506400-159511200	Enhancers	A549	lung
47	chr3:159506400-159512400	Weak transcription	Right Atrium	heart
48	chr3:159506400-159512600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr3:159506400-159513200	Weak transcription	NHLF	lung
50	chr3:159506400-159513800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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