Variant report

Variant	rs67536213
Chromosome Location	chr3:159486196-159486197
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-432B6.3.1-2	chr3:159486093-159486243	ENSG00000241211.1
2	lnc-RP11-432B6.3.1-2	chr3:159486106-159486288	ENSG00000241211.1
3	lnc-RP11-432B6.3.1-2	chr3:159486093-159486288	NONHSAT092962

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11916871	0.80[EUR][1000 genomes]
rs11925884	0.89[ASN][1000 genomes]
rs13064756	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13084311	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13098814	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28362492	0.92[ASN][1000 genomes]
rs34518526	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34579721	0.88[ASN][1000 genomes]
rs35176855	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35537394	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55778776	0.81[EUR][1000 genomes]
rs56272715	0.81[EUR][1000 genomes]
rs57003177	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57440770	0.81[EUR][1000 genomes]
rs59904553	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60546885	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73168557	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73168558	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73168564	0.91[EUR][1000 genomes]
rs73168577	0.80[EUR][1000 genomes]
rs73168579	0.80[EUR][1000 genomes]
rs7648556	0.92[EUR][1000 genomes]
rs924247	0.84[ASN][1000 genomes]
rs9827940	0.84[EUR][1000 genomes]
rs9828333	0.84[EUR][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159483600-159493000	Weak transcription	Gastric	stomach
2	chr3:159483800-159488000	Weak transcription	Spleen	Spleen
3	chr3:159483800-159493200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:159484000-159488200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:159484000-159494600	Weak transcription	Psoas Muscle	Psoas
6	chr3:159484200-159486400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:159484200-159493200	Weak transcription	Lung	lung
8	chr3:159484200-159501200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr3:159484400-159486800	Enhancers	Fetal Heart	heart
10	chr3:159484400-159488000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:159484400-159493000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:159484400-159493000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr3:159484400-159493000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr3:159484400-159493200	Weak transcription	Fetal Stomach	stomach
15	chr3:159484400-159505400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:159484600-159487200	Weak transcription	Fetal Intestine Large	intestine
17	chr3:159484600-159500400	Weak transcription	Fetal Intestine Small	intestine
18	chr3:159484800-159488400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr3:159484800-159489800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:159484800-159493000	Weak transcription	HSMMtube	muscle
21	chr3:159485000-159486200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:159485000-159486800	Enhancers	Brain Substantia Nigra	brain
23	chr3:159485000-159486800	Enhancers	Rectal Smooth Muscle	rectum
24	chr3:159485000-159486800	Strong transcription	NHEK	skin
25	chr3:159485000-159488200	Weak transcription	Brain Anterior Caudate	brain
26	chr3:159485000-159492600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr3:159485000-159492800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr3:159485000-159493000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr3:159485200-159486200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:159485200-159486400	Weak transcription	NHLF	lung
31	chr3:159485400-159486400	Enhancers	HUVEC	blood vessel
32	chr3:159485400-159486600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:159485400-159486800	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
34	chr3:159485400-159486800	Enhancers	NHDF-Ad	bronchial
35	chr3:159485400-159488400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr3:159485600-159486200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:159485600-159486200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr3:159485600-159486200	Enhancers	Colon Smooth Muscle	Colon
39	chr3:159485600-159486400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr3:159485600-159486400	Weak transcription	Left Ventricle	heart
41	chr3:159485600-159486400	Genic enhancers	NH-A	brain
42	chr3:159485600-159486800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr3:159485600-159489600	Weak transcription	Aorta	Aorta
44	chr3:159485600-159493000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr3:159485600-159493000	Weak transcription	HMEC	breast
46	chr3:159485600-159493400	Weak transcription	Fetal Brain Female	brain
47	chr3:159485800-159486200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr3:159485800-159486200	Strong transcription	HSMM	muscle
49	chr3:159485800-159486400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr3:159485800-159486400	Enhancers	Brain Hippocampus Middle	brain

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