Variant report

Variant	rs73168558
Chromosome Location	chr3:159525389-159525390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11916871	0.83[EUR][1000 genomes]
rs13064756	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13084311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13098814	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34518526	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35176855	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35537394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55778776	0.84[EUR][1000 genomes]
rs56272715	0.84[EUR][1000 genomes]
rs57003177	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57440770	0.84[EUR][1000 genomes]
rs59282676	0.80[EUR][1000 genomes]
rs59904553	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60546885	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67536213	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73168557	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73168564	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73168577	0.83[EUR][1000 genomes]
rs73168579	0.83[EUR][1000 genomes]
rs7648556	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9827940	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9828333	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159518400-159531200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:159518800-159531800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:159520000-159526200	Enhancers	Brain Substantia Nigra	brain
4	chr3:159520000-159526400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:159521600-159526200	Weak transcription	Fetal Stomach	stomach
6	chr3:159521800-159525800	Enhancers	Brain Angular Gyrus	brain
7	chr3:159521800-159525800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr3:159521800-159526600	Enhancers	Brain Cingulate Gyrus	brain
9	chr3:159522200-159525800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:159522400-159525800	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr3:159522400-159526800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:159522600-159525600	Enhancers	HMEC	breast
13	chr3:159522600-159525800	Enhancers	NHDF-Ad	bronchial
14	chr3:159522600-159526600	Enhancers	Adipose Nuclei	Adipose
15	chr3:159522800-159526400	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr3:159523000-159525800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:159523000-159526200	Enhancers	Brain Hippocampus Middle	brain
18	chr3:159523000-159526400	Enhancers	Colon Smooth Muscle	Colon
19	chr3:159523000-159531800	Weak transcription	Right Atrium	heart
20	chr3:159523000-159536200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr3:159523400-159531600	Weak transcription	A549	lung
22	chr3:159523400-159532000	Weak transcription	Stomach Mucosa	stomach
23	chr3:159523400-159533000	Weak transcription	Osteobl	bone
24	chr3:159523400-159537800	Weak transcription	NH-A	brain
25	chr3:159523400-159541200	Weak transcription	Fetal Kidney	kidney
26	chr3:159523400-159541400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:159523600-159526400	Enhancers	Stomach Smooth Muscle	stomach
28	chr3:159523800-159525800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr3:159524000-159526400	Enhancers	Rectal Smooth Muscle	rectum
30	chr3:159524000-159526600	Enhancers	Fetal Muscle Leg	muscle
31	chr3:159524200-159525800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:159524200-159525800	Enhancers	NHEK	skin
33	chr3:159524200-159526800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr3:159524200-159531800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr3:159524400-159525800	Enhancers	Brain Anterior Caudate	brain
36	chr3:159524400-159525800	Enhancers	Left Ventricle	heart
37	chr3:159524600-159525800	Weak transcription	Right Ventricle	heart
38	chr3:159524600-159531400	Weak transcription	Fetal Muscle Trunk	muscle
39	chr3:159524600-159535800	Weak transcription	Aorta	Aorta
40	chr3:159524600-159538600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr3:159524800-159526200	Weak transcription	Liver	Liver
42	chr3:159525000-159525400	Weak transcription	NHLF	lung
43	chr3:159525000-159525600	Enhancers	HSMMtube	muscle
44	chr3:159525000-159528400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr3:159525200-159526000	Enhancers	Fetal Lung	lung
46	chr3:159525200-159531400	Weak transcription	HSMM	muscle
47	chr3:159525200-159531600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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