Variant report

Variant	rs73168557
Chromosome Location	chr3:159523890-159523891
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:158981206..158982290-chr3:159522701..159523950,4	MCF-7	breast:
2	chr3:158978276..158980679-chr3:159523029..159524733,2	MCF-7	breast:
3	chr3:159479968..159483823-chr3:159521256..159524933,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250588	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11916871	0.83[EUR][1000 genomes]
rs13064756	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13084311	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13098814	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34518526	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35176855	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35537394	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55778776	0.84[EUR][1000 genomes]
rs56272715	0.84[EUR][1000 genomes]
rs57003177	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57440770	0.84[EUR][1000 genomes]
rs59282676	0.80[EUR][1000 genomes]
rs59904553	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60546885	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67536213	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73168558	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73168564	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73168577	0.83[EUR][1000 genomes]
rs73168579	0.83[EUR][1000 genomes]
rs7648556	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9827940	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9828333	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159516000-159524000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:159517200-159524000	Weak transcription	Liver	Liver
3	chr3:159517600-159524200	Weak transcription	NHEK	skin
4	chr3:159518000-159524400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:159518400-159531200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:159518800-159524400	Weak transcription	Left Ventricle	heart
7	chr3:159518800-159531800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:159520000-159526200	Enhancers	Brain Substantia Nigra	brain
9	chr3:159520000-159526400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:159521600-159526200	Weak transcription	Fetal Stomach	stomach
11	chr3:159521800-159525800	Enhancers	Brain Angular Gyrus	brain
12	chr3:159521800-159525800	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr3:159521800-159526600	Enhancers	Brain Cingulate Gyrus	brain
14	chr3:159522000-159524600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:159522200-159524200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:159522200-159525800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:159522400-159525000	Enhancers	NHLF	lung
18	chr3:159522400-159525800	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr3:159522400-159526800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:159522600-159525600	Enhancers	HMEC	breast
21	chr3:159522600-159525800	Enhancers	NHDF-Ad	bronchial
22	chr3:159522600-159526600	Enhancers	Adipose Nuclei	Adipose
23	chr3:159522800-159525200	Enhancers	HSMM	muscle
24	chr3:159522800-159526400	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr3:159523000-159524400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:159523000-159524400	Weak transcription	Ovary	ovary
27	chr3:159523000-159525800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:159523000-159526200	Enhancers	Brain Hippocampus Middle	brain
29	chr3:159523000-159526400	Enhancers	Colon Smooth Muscle	Colon
30	chr3:159523000-159531800	Weak transcription	Right Atrium	heart
31	chr3:159523000-159536200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr3:159523200-159524200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:159523200-159524200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr3:159523200-159524400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr3:159523200-159524600	Enhancers	Placenta	Placenta
36	chr3:159523400-159524200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr3:159523400-159524400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr3:159523400-159524400	Weak transcription	Brain Anterior Caudate	brain
39	chr3:159523400-159524400	Weak transcription	Right Ventricle	heart
40	chr3:159523400-159531600	Weak transcription	A549	lung
41	chr3:159523400-159532000	Weak transcription	Stomach Mucosa	stomach
42	chr3:159523400-159533000	Weak transcription	Osteobl	bone
43	chr3:159523400-159537800	Weak transcription	NH-A	brain
44	chr3:159523400-159541200	Weak transcription	Fetal Kidney	kidney
45	chr3:159523400-159541400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr3:159523600-159524000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr3:159523600-159524000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr3:159523600-159524000	Weak transcription	Fetal Muscle Leg	muscle
49	chr3:159523600-159524000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr3:159523600-159524600	Enhancers	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links