Variant report

Variant	rs56272715
Chromosome Location	chr3:159554186-159554187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10513546	0.81[AFR][1000 genomes]
rs1109156	0.84[ASN][1000 genomes]
rs11916871	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11925758	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13064756	0.81[EUR][1000 genomes]
rs13098814	0.81[EUR][1000 genomes]
rs34518526	0.81[EUR][1000 genomes]
rs35176855	0.81[EUR][1000 genomes]
rs35537394	0.83[EUR][1000 genomes]
rs3888010	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55778776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57003177	0.82[EUR][1000 genomes]
rs57440770	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59037785	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59282676	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59904553	0.88[EUR][1000 genomes]
rs60546885	0.88[EUR][1000 genomes]
rs67536213	0.81[EUR][1000 genomes]
rs73168557	0.84[EUR][1000 genomes]
rs73168558	0.84[EUR][1000 genomes]
rs73168564	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73168573	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73168577	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73168579	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7648556	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9820807	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9827940	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9828333	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9831996	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9846145	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159542200-159554200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:159543600-159555200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:159543800-159555200	Weak transcription	Lung	lung
4	chr3:159547000-159557400	Weak transcription	Fetal Kidney	kidney
5	chr3:159547800-159556800	Weak transcription	Brain Germinal Matrix	brain
6	chr3:159548600-159554200	Weak transcription	Hela-S3	cervix
7	chr3:159548600-159555000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr3:159548600-159555200	Weak transcription	Left Ventricle	heart
9	chr3:159548800-159554200	Weak transcription	Adipose Nuclei	Adipose
10	chr3:159548800-159554200	Weak transcription	NH-A	brain
11	chr3:159548800-159554400	Weak transcription	NHEK	skin
12	chr3:159549000-159554200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:159549000-159554200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:159549000-159554200	Weak transcription	Osteobl	bone
15	chr3:159549000-159555000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:159549000-159555200	Weak transcription	Right Atrium	heart
17	chr3:159549000-159555200	Weak transcription	Right Ventricle	heart
18	chr3:159549000-159555600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:159549200-159554200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr3:159549400-159554200	Weak transcription	HMEC	breast
21	chr3:159549600-159554200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr3:159549600-159554200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:159550000-159555000	Weak transcription	Fetal Muscle Leg	muscle
24	chr3:159550200-159557600	Weak transcription	Primary B cells from cord blood	blood
25	chr3:159550200-159557600	Weak transcription	Spleen	Spleen
26	chr3:159550600-159554200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr3:159550600-159555600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr3:159551400-159554200	Weak transcription	Brain Anterior Caudate	brain
29	chr3:159551400-159561800	Weak transcription	Aorta	Aorta
30	chr3:159551800-159554800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr3:159551800-159557600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr3:159551800-159557600	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr3:159552800-159557400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr3:159552800-159557800	Enhancers	HUVEC	blood vessel
35	chr3:159553000-159556200	Enhancers	Colon Smooth Muscle	Colon
36	chr3:159553200-159557400	Enhancers	Rectal Smooth Muscle	rectum
37	chr3:159553600-159556000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr3:159553600-159556000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr3:159553600-159556000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr3:159553600-159556000	Enhancers	NHDF-Ad	bronchial
41	chr3:159553800-159554800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr3:159553800-159555800	Enhancers	Fetal Heart	heart
43	chr3:159553800-159556000	Enhancers	Brain Cingulate Gyrus	brain
44	chr3:159553800-159556000	Enhancers	HSMMtube	muscle
45	chr3:159554000-159554200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:159554000-159554600	Enhancers	Psoas Muscle	Psoas
47	chr3:159554000-159554600	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr3:159554000-159555800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr3:159554000-159556000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr3:159554000-159556000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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