Variant report

Variant	rs9831996
Chromosome Location	chr3:159558410-159558411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1109156	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11916871	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11925758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13064756	0.90[CEU][hapmap]
rs3888010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55778776	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56272715	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57440770	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59282676	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59904553	0.81[EUR][1000 genomes]
rs60546885	0.81[EUR][1000 genomes]
rs73168564	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73168573	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73168577	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73168579	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7648556	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9820807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827940	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9828333	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9846145	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159551400-159561800	Weak transcription	Aorta	Aorta
2	chr3:159555200-159561600	Weak transcription	NHLF	lung
3	chr3:159555600-159561800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:159556000-159558600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:159556000-159558600	Weak transcription	Hela-S3	cervix
6	chr3:159556000-159561800	Weak transcription	NHDF-Ad	bronchial
7	chr3:159556000-159566200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:159556200-159563400	Weak transcription	NHEK	skin
9	chr3:159557000-159559200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:159557000-159559800	Active TSS	Brain Anterior Caudate	brain
11	chr3:159557000-159560000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:159557200-159559000	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr3:159557200-159559400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:159557200-159559800	Active TSS	Cortex derived primary cultured neurospheres	brain
15	chr3:159557200-159560000	Active TSS	Fetal Brain Female	brain
16	chr3:159557200-159560200	Active TSS	Brain Germinal Matrix	brain
17	chr3:159557200-159560800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:159557400-159558600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:159557400-159558600	Flanking Active TSS	Rectal Smooth Muscle	rectum
20	chr3:159557400-159558600	Active TSS	Right Atrium	heart
21	chr3:159557400-159558800	Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr3:159557400-159558800	Active TSS	Fetal Brain Male	brain
23	chr3:159557400-159559000	Active TSS	H1 Cell Line	embryonic stem cell
24	chr3:159557400-159559000	Active TSS	H9 Cell Line	embryonic stem cell
25	chr3:159557400-159559000	Active TSS	GM12878-XiMat	blood
26	chr3:159557400-159559200	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr3:159557400-159559600	Active TSS	Brain Cingulate Gyrus	brain
28	chr3:159557400-159559600	Active TSS	Brain Hippocampus Middle	brain
29	chr3:159557400-159560000	Active TSS	Brain Substantia Nigra	brain
30	chr3:159557400-159560400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:159557400-159560400	Active TSS	Brain Angular Gyrus	brain
32	chr3:159557400-159561200	Active TSS	Brain Inferior Temporal Lobe	brain
33	chr3:159557600-159558600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr3:159557600-159558800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
35	chr3:159557600-159559000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr3:159557600-159559200	Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr3:159557600-159559400	Active TSS	Fetal Kidney	kidney
38	chr3:159557600-159560000	Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr3:159557600-159561600	Weak transcription	Osteobl	bone
40	chr3:159557800-159558600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr3:159557800-159558800	Weak transcription	Adipose Nuclei	Adipose
42	chr3:159557800-159559000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:159557800-159561600	Weak transcription	HUVEC	blood vessel
44	chr3:159558000-159558600	Active TSS	Fetal Intestine Small	intestine
45	chr3:159558000-159558800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
46	chr3:159558000-159559000	Flanking Active TSS	Colon Smooth Muscle	Colon
47	chr3:159558000-159559200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
48	chr3:159558000-159559400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr3:159558000-159559600	Enhancers	A549	lung
50	chr3:159558000-159561000	Weak transcription	Placenta	Placenta

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