Variant report

Variant	rs9846145
Chromosome Location	chr3:159564144-159564145
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1109156	0.87[ASN][1000 genomes]
rs11916871	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11925758	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3888010	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55778776	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56272715	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57440770	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59282676	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59904553	0.81[EUR][1000 genomes]
rs60546885	0.81[EUR][1000 genomes]
rs73168564	0.83[EUR][1000 genomes]
rs73168573	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73168577	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73168579	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7648556	0.82[EUR][1000 genomes]
rs9820807	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9827940	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9828333	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9831996	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159556000-159566200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:159558000-159568800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:159558000-159570800	Weak transcription	Pancreas	Pancrea
4	chr3:159558000-159575000	Weak transcription	Gastric	stomach
5	chr3:159558200-159565800	Weak transcription	Spleen	Spleen
6	chr3:159558600-159566000	Weak transcription	Right Atrium	heart
7	chr3:159558800-159570600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr3:159559000-159569400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:159559000-159570600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr3:159560000-159565200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr3:159560200-159565400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr3:159560400-159569200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:159560600-159568400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:159561000-159565800	Enhancers	Primary hematopoietic stem cells	blood
15	chr3:159561000-159567400	Enhancers	Brain Substantia Nigra	brain
16	chr3:159561200-159565000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:159561600-159566200	Enhancers	HSMMtube	muscle
18	chr3:159561800-159564200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:159561800-159564200	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr3:159561800-159565400	Enhancers	HMEC	breast
21	chr3:159561800-159570400	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr3:159561800-159570400	Enhancers	Colon Smooth Muscle	Colon
23	chr3:159562200-159567200	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr3:159562400-159564200	Enhancers	Fetal Brain Female	brain
25	chr3:159562400-159564400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:159562400-159570400	Enhancers	Brain Cingulate Gyrus	brain
27	chr3:159562600-159565000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:159562600-159569400	Enhancers	Brain Angular Gyrus	brain
29	chr3:159562800-159565400	Enhancers	Muscle Satellite Cultured Cells	--
30	chr3:159562800-159566200	Enhancers	HSMM	muscle
31	chr3:159562800-159570000	Weak transcription	Adipose Nuclei	Adipose
32	chr3:159563000-159564400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:159563000-159564400	Enhancers	Stomach Smooth Muscle	stomach
34	chr3:159563000-159564800	Weak transcription	NHDF-Ad	bronchial
35	chr3:159563000-159565200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr3:159563000-159565200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr3:159563000-159565200	Weak transcription	Fetal Kidney	kidney
38	chr3:159563000-159565200	Weak transcription	HUVEC	blood vessel
39	chr3:159563000-159566200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr3:159563000-159567200	Weak transcription	Fetal Stomach	stomach
41	chr3:159563000-159567200	Weak transcription	Psoas Muscle	Psoas
42	chr3:159563000-159567600	Enhancers	Brain Hippocampus Middle	brain
43	chr3:159563000-159569000	Weak transcription	Fetal Brain Male	brain
44	chr3:159563000-159569600	Weak transcription	Small Intestine	intestine
45	chr3:159563000-159570600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr3:159563200-159569400	Enhancers	Brain Anterior Caudate	brain
47	chr3:159563400-159564400	Enhancers	NHEK	skin
48	chr3:159563400-159566000	Weak transcription	Lung	lung
49	chr3:159563600-159564200	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr3:159563600-159564400	Enhancers	Liver	Liver

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