Variant report

Variant	rs9820807
Chromosome Location	chr3:159556111-159556112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1109156	0.83[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11916871	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11925758	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];0.93[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13064756	0.90[CEU][hapmap]
rs3888010	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55778776	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56272715	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57440770	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59282676	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59904553	0.82[EUR][1000 genomes]
rs60546885	0.82[EUR][1000 genomes]
rs73168564	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73168573	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73168577	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73168579	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7648556	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9827940	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9828333	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9831996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9846145	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159547000-159557400	Weak transcription	Fetal Kidney	kidney
2	chr3:159547800-159556800	Weak transcription	Brain Germinal Matrix	brain
3	chr3:159550200-159557600	Weak transcription	Primary B cells from cord blood	blood
4	chr3:159550200-159557600	Weak transcription	Spleen	Spleen
5	chr3:159551400-159561800	Weak transcription	Aorta	Aorta
6	chr3:159551800-159557600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:159551800-159557600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr3:159552800-159557400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:159552800-159557800	Enhancers	HUVEC	blood vessel
10	chr3:159553000-159556200	Enhancers	Colon Smooth Muscle	Colon
11	chr3:159553200-159557400	Enhancers	Rectal Smooth Muscle	rectum
12	chr3:159554000-159557200	Enhancers	Brain Angular Gyrus	brain
13	chr3:159554000-159557400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr3:159554000-159557400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:159554000-159557400	Enhancers	Brain Hippocampus Middle	brain
16	chr3:159554000-159557400	Enhancers	Brain Substantia Nigra	brain
17	chr3:159554200-159556400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:159554200-159556400	Enhancers	HMEC	breast
19	chr3:159554200-159557000	Enhancers	Brain Anterior Caudate	brain
20	chr3:159554400-159556200	Enhancers	NHEK	skin
21	chr3:159554600-159557200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:159554800-159556200	Enhancers	Primary hematopoietic stem cells	blood
23	chr3:159555000-159556200	Enhancers	Fetal Muscle Leg	muscle
24	chr3:159555000-159557800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:159555000-159558000	Weak transcription	A549	lung
26	chr3:159555200-159556200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr3:159555200-159561600	Weak transcription	NHLF	lung
28	chr3:159555400-159557400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr3:159555400-159557600	Weak transcription	Placenta	Placenta
30	chr3:159555400-159557800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:159555600-159557200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr3:159555600-159561800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr3:159555800-159556200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr3:159555800-159556200	Weak transcription	Fetal Muscle Trunk	muscle
35	chr3:159555800-159556600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr3:159555800-159556800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr3:159555800-159556800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr3:159555800-159556800	Weak transcription	Small Intestine	intestine
39	chr3:159555800-159557000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr3:159555800-159557000	Weak transcription	Osteobl	bone
41	chr3:159555800-159557200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr3:159555800-159557200	Weak transcription	NH-A	brain
43	chr3:159555800-159557400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr3:159555800-159557400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr3:159555800-159557400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:159555800-159557400	Weak transcription	Adipose Nuclei	Adipose
47	chr3:159555800-159557600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr3:159555800-159557600	Weak transcription	Lung	lung
49	chr3:159555800-159557800	Weak transcription	Fetal Heart	heart
50	chr3:159555800-159557800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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