Variant report

Variant	rs73168564
Chromosome Location	chr3:159544206-159544207
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11916871	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11925758	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13064756	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13084311	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13098814	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34518526	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35176855	0.91[EUR][1000 genomes]
rs35537394	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3888010	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55778776	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56272715	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57003177	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57440770	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59282676	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59904553	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60546885	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67536213	0.91[EUR][1000 genomes]
rs73168557	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73168558	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73168573	0.80[EUR][1000 genomes]
rs73168577	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73168579	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7648556	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9820807	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9827940	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828333	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9831996	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9846145	0.83[EUR][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159532400-159546400	Weak transcription	Fetal Stomach	stomach
2	chr3:159536600-159546400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:159537000-159546400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:159537000-159546600	Weak transcription	Right Atrium	heart
5	chr3:159540400-159544400	Enhancers	Stomach Smooth Muscle	stomach
6	chr3:159540800-159546400	Weak transcription	Brain Anterior Caudate	brain
7	chr3:159541400-159546400	Weak transcription	Psoas Muscle	Psoas
8	chr3:159542200-159544800	Enhancers	HSMM	muscle
9	chr3:159542200-159546600	Weak transcription	Aorta	Aorta
10	chr3:159542200-159554200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:159542600-159546400	Weak transcription	Adipose Nuclei	Adipose
12	chr3:159542600-159546400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr3:159542800-159545800	Weak transcription	HUVEC	blood vessel
14	chr3:159542800-159546200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:159543000-159546200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:159543000-159546400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:159543200-159546400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:159543200-159546400	Weak transcription	A549	lung
19	chr3:159543400-159546000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:159543400-159546200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:159543400-159546400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:159543400-159546400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:159543400-159546400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr3:159543400-159546400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr3:159543400-159546400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr3:159543400-159546400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr3:159543400-159546400	Weak transcription	Hela-S3	cervix
28	chr3:159543400-159546400	Weak transcription	NH-A	brain
29	chr3:159543400-159546400	Weak transcription	Osteobl	bone
30	chr3:159543400-159548400	Weak transcription	Spleen	Spleen
31	chr3:159543600-159546400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr3:159543600-159546600	Weak transcription	Stomach Mucosa	stomach
33	chr3:159543600-159548400	Weak transcription	Left Ventricle	heart
34	chr3:159543600-159555200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr3:159543800-159544600	Enhancers	Brain Substantia Nigra	brain
36	chr3:159543800-159545800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:159543800-159545800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:159543800-159546400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr3:159543800-159546400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr3:159543800-159546400	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr3:159543800-159546400	Weak transcription	Brain Angular Gyrus	brain
42	chr3:159543800-159546400	Weak transcription	Colon Smooth Muscle	Colon
43	chr3:159543800-159546400	Weak transcription	Fetal Heart	heart
44	chr3:159543800-159546400	Weak transcription	Fetal Intestine Large	intestine
45	chr3:159543800-159546400	Weak transcription	Fetal Kidney	kidney
46	chr3:159543800-159546400	Weak transcription	Fetal Muscle Leg	muscle
47	chr3:159543800-159546400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr3:159543800-159546400	Weak transcription	NHDF-Ad	bronchial
49	chr3:159543800-159546400	Weak transcription	NHEK	skin
50	chr3:159543800-159546400	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links