Variant report

Variant	rs3888010
Chromosome Location	chr3:159559868-159559869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1109156	0.83[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11916871	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11925758	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13064756	0.90[CEU][hapmap]
rs55778776	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56272715	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57440770	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59282676	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59904553	0.81[EUR][1000 genomes]
rs60546885	0.81[EUR][1000 genomes]
rs73168564	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73168573	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73168577	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73168579	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7648556	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9820807	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827940	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9828333	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9831996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9846145	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159551400-159561800	Weak transcription	Aorta	Aorta
2	chr3:159555200-159561600	Weak transcription	NHLF	lung
3	chr3:159555600-159561800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:159556000-159561800	Weak transcription	NHDF-Ad	bronchial
5	chr3:159556000-159566200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:159556200-159563400	Weak transcription	NHEK	skin
7	chr3:159557000-159560000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:159557200-159560000	Active TSS	Fetal Brain Female	brain
9	chr3:159557200-159560200	Active TSS	Brain Germinal Matrix	brain
10	chr3:159557200-159560800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:159557400-159560000	Active TSS	Brain Substantia Nigra	brain
12	chr3:159557400-159560400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:159557400-159560400	Active TSS	Brain Angular Gyrus	brain
14	chr3:159557400-159561200	Active TSS	Brain Inferior Temporal Lobe	brain
15	chr3:159557600-159560000	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr3:159557600-159561600	Weak transcription	Osteobl	bone
17	chr3:159557800-159561600	Weak transcription	HUVEC	blood vessel
18	chr3:159558000-159561000	Weak transcription	Placenta	Placenta
19	chr3:159558000-159562600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr3:159558000-159568800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:159558000-159570800	Weak transcription	Pancreas	Pancrea
22	chr3:159558000-159575000	Weak transcription	Gastric	stomach
23	chr3:159558200-159560000	Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr3:159558200-159561800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:159558200-159561800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:159558200-159561800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr3:159558200-159562800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr3:159558200-159562800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr3:159558200-159562800	Weak transcription	Lung	lung
30	chr3:159558200-159565800	Weak transcription	Spleen	Spleen
31	chr3:159558400-159560200	Enhancers	Fetal Heart	heart
32	chr3:159558400-159561600	Weak transcription	HSMMtube	muscle
33	chr3:159558400-159562600	Weak transcription	Right Ventricle	heart
34	chr3:159558400-159562800	Weak transcription	Left Ventricle	heart
35	chr3:159558400-159562800	Weak transcription	Psoas Muscle	Psoas
36	chr3:159558600-159560200	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr3:159558600-159560600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr3:159558600-159561800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr3:159558600-159566000	Weak transcription	Right Atrium	heart
40	chr3:159558800-159560200	Flanking Active TSS	Fetal Brain Male	brain
41	chr3:159558800-159560400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr3:159558800-159570600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr3:159559000-159560000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr3:159559000-159560000	Enhancers	HMEC	breast
45	chr3:159559000-159560200	Weak transcription	Primary hematopoietic stem cells	blood
46	chr3:159559000-159560400	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr3:159559000-159561200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr3:159559000-159561800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr3:159559000-159561800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr3:159559000-159561800	Weak transcription	HSMM	muscle

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