Variant report

Variant	rs59037785
Chromosome Location	chr3:159573850-159573851
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159568526..159570707-chr3:159572408..159575068,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11916871	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55778776	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56272715	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57440770	0.81[EUR][1000 genomes]
rs59282676	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73168577	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73168579	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159558000-159575000	Weak transcription	Gastric	stomach
2	chr3:159568800-159576800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:159569600-159577800	Weak transcription	Colonic Mucosa	Colon
4	chr3:159569600-159578400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:159570200-159575200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:159570200-159576800	Active TSS	Right Ventricle	heart
7	chr3:159570800-159574800	Weak transcription	Thymus	Thymus
8	chr3:159570800-159576000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:159570800-159578000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr3:159571000-159574800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:159571000-159577800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:159571200-159574000	Enhancers	Brain Germinal Matrix	brain
13	chr3:159571200-159574600	Weak transcription	Fetal Thymus	thymus
14	chr3:159571200-159575800	Weak transcription	Fetal Intestine Small	intestine
15	chr3:159571200-159576000	Active TSS	Right Atrium	heart
16	chr3:159571200-159579200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr3:159571400-159574400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:159571400-159574400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr3:159571400-159574800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr3:159571400-159575200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:159571400-159578400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr3:159571400-159580200	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr3:159571600-159575800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:159571600-159578000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:159572000-159574000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr3:159572000-159575000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr3:159572000-159582800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr3:159572400-159580400	Enhancers	Primary hematopoietic stem cells	blood
29	chr3:159572400-159589400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr3:159572600-159574000	Weak transcription	GM12878-XiMat	blood
31	chr3:159572600-159574400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr3:159572600-159574400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:159572600-159574600	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr3:159572600-159575200	Enhancers	NHLF	lung
35	chr3:159572600-159577600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr3:159572800-159574200	Enhancers	Brain Cingulate Gyrus	brain
37	chr3:159572800-159574400	Enhancers	Brain Angular Gyrus	brain
38	chr3:159572800-159574400	Weak transcription	Ovary	ovary
39	chr3:159572800-159576800	Enhancers	Fetal Stomach	stomach
40	chr3:159572800-159579000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr3:159573000-159574000	Weak transcription	Fetal Muscle Trunk	muscle
42	chr3:159573000-159574000	Enhancers	Rectal Smooth Muscle	rectum
43	chr3:159573000-159574000	Enhancers	A549	lung
44	chr3:159573000-159574000	Enhancers	NHEK	skin
45	chr3:159573000-159574200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr3:159573000-159574200	Weak transcription	Aorta	Aorta
47	chr3:159573000-159574200	Enhancers	HMEC	breast
48	chr3:159573000-159574200	Enhancers	NHDF-Ad	bronchial
49	chr3:159573000-159574200	Enhancers	Osteobl	bone
50	chr3:159573000-159575400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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