Variant report

Variant	rs34619035
Chromosome Location	chr7:96369721-96369722
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10246768	1.00[ASN][1000 genomes]
rs10262804	1.00[ASN][1000 genomes]
rs10269009	1.00[ASN][1000 genomes]
rs10276806	1.00[ASN][1000 genomes]
rs3942589	0.83[CEU][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes]
rs4733	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs55902035	0.86[AMR][1000 genomes]
rs73228356	0.83[AMR][1000 genomes]
rs952005	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532174	chr7:96221237-96375826	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv831065	chr7:96275832-96436031	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34619035	DLX6	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96351400-96372800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:96368200-96369800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr7:96368400-96369800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:96368400-96370000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:96368600-96369800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr7:96368600-96370000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:96368600-96370000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:96368800-96369800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:96368800-96369800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr7:96369000-96370000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:96369200-96369800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr7:96369200-96369800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr7:96369400-96369800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr7:96369400-96369800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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