Variant report

Variant	rs73228356
Chromosome Location	chr7:96356061-96356062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:96345387..96347273-chr7:96355330..96357331,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10226466	1.00[EUR][1000 genomes]
rs10234669	0.91[EUR][1000 genomes]
rs10236162	0.87[EUR][1000 genomes]
rs10242066	0.95[EUR][1000 genomes]
rs10246774	1.00[EUR][1000 genomes]
rs10249910	0.87[EUR][1000 genomes]
rs10252396	1.00[EUR][1000 genomes]
rs10259875	1.00[EUR][1000 genomes]
rs10270175	1.00[EUR][1000 genomes]
rs10270486	1.00[EUR][1000 genomes]
rs10273237	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10276660	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10278521	0.91[EUR][1000 genomes]
rs1581538	0.95[EUR][1000 genomes]
rs1608739	0.95[EUR][1000 genomes]
rs17167680	0.87[EUR][1000 genomes]
rs17167699	1.00[EUR][1000 genomes]
rs17413240	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17495340	0.86[EUR][1000 genomes]
rs1917482	0.95[EUR][1000 genomes]
rs2140741	0.95[EUR][1000 genomes]
rs2272	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34619035	0.83[AMR][1000 genomes]
rs3942589	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55902035	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67368115	0.91[EUR][1000 genomes]
rs67548673	1.00[EUR][1000 genomes]
rs67658953	0.95[EUR][1000 genomes]
rs73228327	0.95[EUR][1000 genomes]
rs73228328	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73228329	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73228347	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73228355	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73228360	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73228364	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7341440	1.00[EUR][1000 genomes]
rs952005	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532174	chr7:96221237-96375826	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv831065	chr7:96275832-96436031	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96350800-96356800	Weak transcription	HMEC	breast
2	chr7:96350800-96357000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:96351000-96356600	Weak transcription	NHEK	skin
4	chr7:96351400-96372800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr7:96353400-96356600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:96353600-96356800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:96353600-96357000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:96353800-96356600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:96353800-96356800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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