Variant report

Variant	rs73228327
Chromosome Location	chr7:96275809-96275810
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC092031.1-1	chr7:96275036-96276378	XLOC_006529

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10226466	0.95[EUR][1000 genomes]
rs10234669	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10236162	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10242066	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10246774	0.95[EUR][1000 genomes]
rs10249910	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10252396	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10259875	0.95[EUR][1000 genomes]
rs10270175	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10270486	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10273237	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10276660	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10278521	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1581538	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1608739	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17167680	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17167699	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17413240	0.88[EUR][1000 genomes]
rs17495340	0.91[EUR][1000 genomes]
rs1917482	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2140741	1.00[EUR][1000 genomes]
rs2272	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3942589	0.95[EUR][1000 genomes]
rs55902035	0.95[EUR][1000 genomes]
rs67368115	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67548673	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67658953	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73228328	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73228329	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73228347	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73228355	0.95[EUR][1000 genomes]
rs73228356	0.95[EUR][1000 genomes]
rs73228360	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73228364	0.88[EUR][1000 genomes]
rs7341440	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs952005	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888756	chr7:95937098-96343665	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv831064	chr7:96107530-96289042	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv532174	chr7:96221237-96375826	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96249800-96292800	Weak transcription	Left Ventricle	heart
2	chr7:96250200-96317400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr7:96258200-96299800	Weak transcription	Ovary	ovary
4	chr7:96266000-96301200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:96266600-96317000	Weak transcription	Right Ventricle	heart
6	chr7:96267600-96301400	Weak transcription	Aorta	Aorta
7	chr7:96272200-96301400	Weak transcription	Spleen	Spleen
8	chr7:96273600-96279200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:96273600-96287000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:96274800-96282200	Weak transcription	Liver	Liver
11	chr7:96275800-96276800	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links