Variant report

Variant	rs17167680
Chromosome Location	chr7:96285017-96285018
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10226466	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10234669	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10236162	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10242066	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10246774	0.87[EUR][1000 genomes]
rs10249910	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10252396	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10259875	0.87[EUR][1000 genomes]
rs10270175	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10270486	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10273237	0.87[EUR][1000 genomes]
rs10276660	0.87[EUR][1000 genomes]
rs10278521	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1581538	0.91[EUR][1000 genomes]
rs1608739	0.91[EUR][1000 genomes]
rs17167699	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17413240	0.81[EUR][1000 genomes]
rs17495340	0.83[EUR][1000 genomes]
rs1917482	0.91[EUR][1000 genomes]
rs2140741	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2272	0.87[EUR][1000 genomes]
rs3942589	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs55902035	0.87[EUR][1000 genomes]
rs67368115	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67548673	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67658953	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73228327	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73228328	0.91[EUR][1000 genomes]
rs73228329	0.91[EUR][1000 genomes]
rs73228347	0.87[EUR][1000 genomes]
rs73228355	0.87[EUR][1000 genomes]
rs73228356	0.87[EUR][1000 genomes]
rs73228360	0.87[EUR][1000 genomes]
rs73228364	0.81[EUR][1000 genomes]
rs7341440	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs952005	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888756	chr7:95937098-96343665	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv831064	chr7:96107530-96289042	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv532174	chr7:96221237-96375826	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv831065	chr7:96275832-96436031	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96249800-96292800	Weak transcription	Left Ventricle	heart
2	chr7:96250200-96317400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr7:96258200-96299800	Weak transcription	Ovary	ovary
4	chr7:96266000-96301200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:96266600-96317000	Weak transcription	Right Ventricle	heart
6	chr7:96267600-96301400	Weak transcription	Aorta	Aorta
7	chr7:96272200-96301400	Weak transcription	Spleen	Spleen
8	chr7:96273600-96287000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:96277400-96285200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:96278400-96285600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:96278400-96301400	Weak transcription	Psoas Muscle	Psoas
12	chr7:96279800-96285400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:96281000-96286800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:96281200-96287000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:96282200-96295200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr7:96283200-96293600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr7:96284200-96285200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:96284200-96288800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:96284400-96320000	Weak transcription	Pancreas	Pancrea
20	chr7:96284400-96331200	Weak transcription	Lung	lung
21	chr7:96284600-96285400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:96284600-96285600	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr7:96284600-96286400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr7:96284600-96287400	Weak transcription	Esophagus	oesophagus
25	chr7:96284600-96300200	Weak transcription	Fetal Stomach	stomach

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