Variant report

Variant	rs10249910
Chromosome Location	chr7:96278234-96278235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:96277427..96279783-chr7:96282053..96284232,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10226466	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10234669	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10236162	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10242066	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10246774	0.87[EUR][1000 genomes]
rs10252396	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10259875	0.87[EUR][1000 genomes]
rs10270175	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10270486	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10273237	0.87[EUR][1000 genomes]
rs10276660	0.87[EUR][1000 genomes]
rs10278521	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1581538	0.91[EUR][1000 genomes]
rs1608739	0.91[EUR][1000 genomes]
rs17167680	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17167699	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17413240	0.81[EUR][1000 genomes]
rs17495340	0.83[EUR][1000 genomes]
rs1917482	0.91[EUR][1000 genomes]
rs2140741	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2272	0.87[EUR][1000 genomes]
rs3942589	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs55902035	0.87[EUR][1000 genomes]
rs67368115	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67548673	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67658953	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73228327	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73228328	0.91[EUR][1000 genomes]
rs73228329	0.91[EUR][1000 genomes]
rs73228347	0.87[EUR][1000 genomes]
rs73228355	0.87[EUR][1000 genomes]
rs73228356	0.87[EUR][1000 genomes]
rs73228360	0.87[EUR][1000 genomes]
rs73228364	0.81[EUR][1000 genomes]
rs7341440	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs952005	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888756	chr7:95937098-96343665	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv831064	chr7:96107530-96289042	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv532174	chr7:96221237-96375826	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv831065	chr7:96275832-96436031	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96249800-96292800	Weak transcription	Left Ventricle	heart
2	chr7:96250200-96317400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr7:96258200-96299800	Weak transcription	Ovary	ovary
4	chr7:96266000-96301200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:96266600-96317000	Weak transcription	Right Ventricle	heart
6	chr7:96267600-96301400	Weak transcription	Aorta	Aorta
7	chr7:96272200-96301400	Weak transcription	Spleen	Spleen
8	chr7:96273600-96279200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:96273600-96287000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:96274800-96282200	Weak transcription	Liver	Liver
11	chr7:96276800-96279600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:96277200-96278400	Enhancers	Fetal Brain Male	brain
13	chr7:96277400-96285200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:96278200-96278400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:96278200-96278400	Enhancers	Psoas Muscle	Psoas
16	chr7:96278200-96282200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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